rpsD:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417755&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417755&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:57, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Oryza gramene

  • Q6QY73 (score: 1.000; bootstrap: 100%)
  • P12147 (score: 1.000; bootstrap: 100%)
  • Q6ENH2 (score: 1.000; bootstrap: 100%)
  • Q7G222 (score: 1.000; bootstrap: 100%)
  • Q9TJU6 (score: 0.963)
  • Q6ENW1 (score: 0.955)
  • Q6L397 (score: 0.955)
  • P02355 (score: 0.955)
  • P69649 (score: 0.937)
  • P69634 (score: 0.937)
  • Q6LB26 (score: 0.933)
  • P36454 (score: 0.933)
  • P36473 (score: 0.925)
  • P69654 (score: 0.925)
  • P69650 (score: 0.925)
  • Q9TJX9 (score: 0.925)
  • Q95H61 (score: 0.918)
  • P69653 (score: 0.918)
  • P69631 (score: 0.918)
  • Q9THJ9 (score: 0.907)
  • Q9TJV9 (score: 0.907)
  • Q6LB25 (score: 0.899)
  • P69648 (score: 0.899)
  • P36467 (score: 0.899)
  • P69645 (score: 0.899)
  • P69640 (score: 0.899)
  • P69638 (score: 0.899)
  • P69637 (score: 0.899)
  • P69636 (score: 0.899)
  • P69635 (score: 0.899)
  • P69630 (score: 0.899)
  • P36456 (score: 0.899)
  • P36447 (score: 0.896)
  • Q9TJX4 (score: 0.892)
  • P36472 (score: 0.892)
  • P36466 (score: 0.888)
  • P69644 (score: 0.888)
  • P69641 (score: 0.888)
  • P36451 (score: 0.888)
  • P69646 (score: 0.888)
  • P69642 (score: 0.888)
  • P36464 (score: 0.884)
  • Q9TJX5 (score: 0.881)
  • P36459 (score: 0.881)
  • P36465 (score: 0.873)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000043399 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPSD

From SHIGELLACYC

E. coli O157

RPSD

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00163

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Notes

Links

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Name URL Comments
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References

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