ppc:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418391&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418391&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:56, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G68750 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0187592 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • P29194 (score: 1.000; bootstrap: 100%)
  • P51059 (score: 0.963)
  • Q69LW4 (score: 0.928)
  • O82072 (score: 0.910)
  • Q8H4V1 (score: 0.904)
  • Q84XH0 (score: 0.893)
  • P29193 (score: 0.820)
  • Q9FYX8 (score: 0.797)
  • Q6EUD7 (score: 0.797)
  • Q9SAZ6 (score: 0.788)
  • P29195 (score: 0.788)
  • Q6RUV4 (score: 0.784)
  • Q84MZ3 (score: 0.772)
  • Q5JLS6 (score: 0.753)
  • Q8S2Z8 (score: 0.706)
  • Q43267 (score: 0.685)
  • Q84KR7 (score: 0.683)
  • P04711 (score: 0.682)
  • Q9FQ80 (score: 0.674)
  • Q5QNA5 (score: 0.665)
  • Q8L6C3 (score: 0.649)
  • Q9FS96 (score: 0.649)
  • Q8H1X3 (score: 0.644)
  • P15804 (score: 0.635)
  • Q5D5T4 (score: 0.216)
  • Q657S3 (score: 0.065)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000027913 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

PPC

From SHIGELLACYC

E. coli O157

PPC

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00311

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Notes

Links

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Name URL Comments
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References

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Categories

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