nrdB:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416738&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416738&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:55, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000023621 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000024612 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G23580 (score: 1.000; bootstrap: 100%)
  • AT3G27060 (score: 0.672)
  • AT5G40942 (score: 0.156)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010802 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000028260 (score: 0.571)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039246 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004392 (score: 1.000; bootstrap: 100%)
  • WBGene00017610 (score: 0.321)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000854 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000005080 (score: 0.746)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000010349 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040718-31 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-767 (score: 0.997)
  • ZDB-GENE-990415-25 (score: 0.997)
  • ZDB-CDNA-051113-6 (score: 0.647)
  • ZDB-GENE-030616-614 (score: 0.647)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185062 (score: 1.000; bootstrap: 100%)
  • DDB0217423 (score: 1.000; bootstrap: 100%)
  • DDB0184057 (score: 0.286)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0011704 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21447-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025808 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000030966 (score: 0.741)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000251810 (score: 1.000; bootstrap: 100%)
  • ENSP00000302955 (score: 0.744)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000027327 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000002749 (score: 0.555)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007415 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018460 (score: 0.808)

From Inparanoid:20070104

Mus musculus

  • MGI:98181 (score: 1.000; bootstrap: 100%)
  • MGI:2155865 (score: 0.681)
  • MGI:3643040 (score: 0.291)

From Inparanoid:20070104

Oryza gramene

  • Q652F0 (score: 1.000; bootstrap: 100%)
  • Q5VRJ6 (score: 0.951)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035025 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000020027 (score: 0.744)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000011163 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000037227 (score: 0.999)
  • ENSRNOP00000038047 (score: 0.581)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YJL026W (score: 1.000; bootstrap: 100%)
  • YGR180C (score: 0.446)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC25D124 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140270 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000153067 (score: 0.743)
  • NEWSINFRUP00000182012 (score: 0.210)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00012923001 (score: 1.000; bootstrap: 100%)
  • GSTENP00003453001 (score: 0.495)
  • GSTENP00003458001 (score: 0.403)
  • GSTENP00003455001 (score: 0.300)
  • GSTENP00000721001 (score: 0.078)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000007621 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

NRDB

From SHIGELLACYC

E. coli O157

NRDB

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00268

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Notes

Links

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Name URL Comments
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References

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Categories

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