katG:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418377&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418377&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:53, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT4G35970 (score: 1.000; bootstrap: 100%)
  • AT4G35000 (score: 0.596)
  • AT3G09640 (score: 0.435)
  • AT1G07890 (score: 0.408)
  • AT4G08390 (score: 0.285)
  • AT1G77490 (score: 0.250)
  • AT4G32320 (score: 0.096)

From Inparanoid:20070104

Oryza gramene

  • Q8GZZ2 (score: 1.000; bootstrap: 100%)
  • Q84QS3 (score: 1.000; bootstrap: 100%)
  • P93404 (score: 1.000; bootstrap: 100%)
  • Q6ZJJ1 (score: 1.000; bootstrap: 100%)
  • O23983 (score: 0.930)
  • Q94IC3 (score: 0.924)
  • Q945R5 (score: 0.831)
  • Q9FE01 (score: 0.831)
  • Q41772 (score: 0.812)
  • Q7XWZ7 (score: 0.735)
  • Q6TY83 (score: 0.731)
  • Q5MJ31 (score: 0.629)
  • Q7FPQ5 (score: 0.509)
  • Q945R6 (score: 0.502)
  • Q7XJ01 (score: 0.353)
  • Q8GZC0 (score: 0.341)
  • Q5J331 (score: 0.337)
  • Q7XJ02 (score: 0.335)
  • Q8GZC1 (score: 0.325)
  • Q7XUS8 (score: 0.321)
  • Q69SV0 (score: 0.311)
  • Q8GZB9 (score: 0.287)
  • Q69JE6 (score: 0.235)
  • Q8LLM6 (score: 0.120)
  • Q5J330 (score: 0.108)
  • Q7F1J9 (score: 0.108)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKR066C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

KATG

From SHIGELLACYC

E. coli O157

KATG

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00141

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Notes

Links

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Name URL Comments
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References

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