groS:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418566&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418566&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:52, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000011747 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025588 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G20720 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000016712 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032786 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00021248 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000016017 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000019044 (score: 0.855)
  • ENSCAFP00000027789 (score: 0.833)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-000906-2 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040625-214 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0187651 (score: 1.000; bootstrap: 100%)
  • DDB0231250 (score: 0.166)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036334 (score: 1.000; bootstrap: 100%)
  • FBgn0038200 (score: 0.504)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10877-PA (score: 1.000; bootstrap: 100%)
  • GA22124-PA (score: 0.529)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014746 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000001160 (score: 0.269)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000233893 (score: 1.000; bootstrap: 100%)
  • ENSP00000339461 (score: 0.841)
  • ENSP00000333665 (score: 0.775)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000009326 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013748 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000030221 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000012726 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013815 (score: 0.745)
  • ENSMMUP00000030903 (score: 0.664)
  • ENSMMUP00000010590 (score: 0.659)
  • ENSMMUP00000029564 (score: 0.401)

From Inparanoid:20070104

Mus musculus

  • MGI:104680 (score: 1.000; bootstrap: 100%)
  • MGI:3644923 (score: 0.955)
  • MGI:1935159 (score: 0.955)
  • MGI:3647053 (score: 0.722)

From Inparanoid:20070104

Oryza gramene

  • Q69K73 (score: 1.000; bootstrap: 100%)
  • Q69QD5 (score: 1.000; bootstrap: 100%)
  • Q69Y99 (score: 1.000; bootstrap: 100%)
  • Q69YA0 (score: 0.857)
  • Q6K826 (score: 0.756)
  • Q6K822 (score: 0.482)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000021827 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000003148 (score: 0.761)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000020066 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000046150 (score: 0.877)
  • ENSRNOP00000007470 (score: 0.630)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YOR020C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5506c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143898 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00021744001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000016357 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

MOPB

From SHIGELLACYC

E. coli O157

MOPB

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00166

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Notes

Links

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Name URL Comments
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References

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Categories

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