glgC:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417888&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417888&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:52, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000003742 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000003549 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G48300 (score: 1.000; bootstrap: 100%)
  • AT5G19220 (score: 0.352)
  • AT1G27680 (score: 0.343)
  • AT2G21590 (score: 0.299)
  • AT4G39210 (score: 0.290)
  • AT1G05610 (score: 0.212)

From Inparanoid:20070104

Oryza gramene

  • Q7EZW3 (score: 1.000; bootstrap: 99%)
  • P55238 (score: 0.861)
  • Q4L1B1 (score: 0.858)
  • Q947B9 (score: 0.852)
  • Q84QT8 (score: 0.810)
  • P15280 (score: 0.793)
  • Q69T99 (score: 0.793)
  • Q9ARH9 (score: 0.789)
  • Q8HS72 (score: 0.783)
  • Q9M4Z1 (score: 0.780)
  • Q941P2 (score: 0.780)
  • P30523 (score: 0.774)
  • Q4L1B2 (score: 0.774)
  • Q5XXD1 (score: 0.769)
  • Q947C0 (score: 0.762)
  • Q84JD3 (score: 0.685)
  • Q84J79 (score: 0.685)
  • Q84PF3 (score: 0.684)
  • Q84J86 (score: 0.684)
  • Q84PF5 (score: 0.675)
  • Q84PF4 (score: 0.674)
  • Q6AVT2 (score: 0.367)
  • O04896 (score: 0.354)
  • Q8GRM4 (score: 0.307)
  • Q7G065 (score: 0.265)
  • Q5VNT5 (score: 0.265)
  • P93430 (score: 0.265)
  • P12299 (score: 0.263)
  • P30524 (score: 0.263)
  • Q9ARI0 (score: 0.260)
  • Q688T8 (score: 0.259)
  • O23809 (score: 0.259)
  • Q7XJA9 (score: 0.254)
  • Q9XHV4 (score: 0.253)
  • P55241 (score: 0.247)
  • O48877 (score: 0.244)
  • P12300 (score: 0.238)
  • P55234 (score: 0.216)
  • O24224 (score: 0.196)
  • Q7X9S8 (score: 0.167)
  • Q4U131 (score: 0.121)
  • Q4U128 (score: 0.121)
  • Q4U168 (score: 0.120)
  • Q4U129 (score: 0.119)
  • Q4U162 (score: 0.118)
  • Q4U133 (score: 0.118)
  • Q4U179 (score: 0.116)
  • Q4U156 (score: 0.116)
  • Q4U140 (score: 0.116)
  • Q4U138 (score: 0.116)
  • Q4U137 (score: 0.116)
  • Q4U135 (score: 0.116)
  • P12298 (score: 0.115)
  • Q84JA5 (score: 0.109)
  • Q84P33 (score: 0.106)
  • Q84P35 (score: 0.105)
  • Q84P32 (score: 0.105)
  • Q84P34 (score: 0.097)
  • Q4U130 (score: 0.082)
  • O22593 (score: 0.064)

From Inparanoid:20070104

Shigella flexneri

GLGC

From SHIGELLACYC

E. coli O157

GLGC

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00483

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Notes

Links

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Name URL Comments
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References

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Categories

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