fbp:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418653&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418653&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:51, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016841 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000022879 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G43670 (score: 1.000; bootstrap: 98%)
  • AT3G54050 (score: 0.105)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012835 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000026056 (score: 0.629)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026892 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001404 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001871 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040822-23 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040822-23 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1587 (score: 0.560)
  • ZDB-GENE-030131-7171 (score: 0.560)
  • ZDB-CDNA-040425-3092 (score: 0.541)
  • ZDB-GENE-021206-11 (score: 0.541)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216231 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032820 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16400-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000020563 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000020562 (score: 0.647)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000253266 (score: 1.000; bootstrap: 100%)
  • ENSP00000253269 (score: 0.641)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029667 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000029668 (score: 0.342)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003412 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000003429 (score: 0.664)

From Inparanoid:20070104

Mus musculus

  • MGI:95491 (score: 1.000; bootstrap: 100%)
  • MGI:95492 (score: 0.613)

From Inparanoid:20070104

Oryza gramene

  • O64421 (score: 1.000; bootstrap: 99%)
  • Q5N9E2 (score: 1.000; bootstrap: 99%)
  • Q9SDL8 (score: 0.997)
  • Q43139 (score: 0.851)
  • Q75HX2 (score: 0.813)
  • Q94JN1 (score: 0.154)
  • P09195 (score: 0.119)
  • Q7G5R1 (score: 0.109)
  • O64422 (score: 0.109)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000036128 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023865 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000023685 (score: 0.339)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR377C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC11984c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000139771 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000168356 (score: 0.515)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025164001 (score: 1.000; bootstrap: 100%)
  • GSTENP00029094001 (score: 0.719)
  • GSTENP00029093001 (score: 0.552)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000038177 (score: 1.000; bootstrap: 71%)
  • ENSXETP00000038182 (score: 0.435)
  • ENSXETP00000005220 (score: 0.415)
  • ENSXETP00000005238 (score: 0.373)

From Inparanoid:20070104

Shigella flexneri

FBP

From SHIGELLACYC

E. coli O157

FBP

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00316

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Notes

Links

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Name URL Comments
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References

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Categories

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