chaC:Evolution: Difference between revisions

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*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415736&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415736&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:50, 14 November 2007

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000022096 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000025705 (score: 0.157)
  • ENSANGP00000013474 (score: 0.128)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000012793 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G44790 (score: 1.000; bootstrap: 100%)
  • AT4G31290 (score: 0.361)
  • AT5G26220 (score: 0.326)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013689 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000025922 (score: 0.259)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037387 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017724 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000013862 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000003988 (score: 0.260)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016957 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050706-146 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050706-55 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0187117 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039109 (score: 1.000; bootstrap: 100%)
  • FBgn0030411 (score: 0.075)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10276-PA (score: 1.000; bootstrap: 100%)
  • GA15390-PA (score: 0.073)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000013867 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000013307 (score: 0.201)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000249798 (score: 1.000; bootstrap: 100%)
  • ENSP00000295304 (score: 0.251)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019093 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013940 (score: 0.259)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000223 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000001947 (score: 0.257)

From Inparanoid:20070104

Mus musculus

  • MGI:1916315 (score: 1.000; bootstrap: 100%)
  • MGI:1915294 (score: 0.243)

From Inparanoid:20070104

Oryza gramene

  • Q6K7C2 (score: 1.000; bootstrap: 100%)
  • Q7XZR5 (score: 0.538)
  • Q7XV22 (score: 0.297)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000011839 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000020465 (score: 0.238)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000019392 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000002094 (score: 0.245)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC31F103 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000175706 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000175380 (score: 0.521)
  • NEWSINFRUP00000145837 (score: 0.232)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00020706001 (score: 1.000; bootstrap: 100%)
  • GSTENP00000823001 (score: 0.497)
  • GSTENP00032360001 (score: 0.478)
  • GSTENP00004877001 (score: 0.261)
  • GSTENP00004875001 (score: 0.217)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000050657 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Shigella flexneri

CHAC

From SHIGELLACYC

E. coli O157

CHAC

From ECOO157CYC

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Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF04752

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Notes

Links

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Name URL Comments
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References

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Categories

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