bglX:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>WikiEntryBot
Automated import of articles
Edited by wikibot
Line 116: Line 116:
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416636&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416636&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


Revision as of 06:49, 14 November 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G02640 (score: 1.000; bootstrap: 54%)
  • AT5G09730 (score: 1.000; bootstrap: 51%)
  • AT5G64570 (score: 0.744)
  • AT5G49360 (score: 0.598)
  • AT3G19620 (score: 0.439)
  • AT5G10560 (score: 0.364)
  • AT1G78060 (score: 0.362)
  • AT5G09700 (score: 0.315)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215373 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000001155 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Oryza gramene

  • Q6VB92 (score: 1.000; bootstrap: 51%)
  • Q8W2Z9 (score: 0.755)
  • Q9LLB8 (score: 0.618)
  • Q8W2Z8 (score: 0.612)
  • Q42835 (score: 0.602)
  • Q8RWR5 (score: 0.597)
  • Q6PQF3 (score: 0.597)
  • Q6ZG89 (score: 0.581)
  • Q8W2Z2 (score: 0.548)
  • Q9XEI3 (score: 0.546)
  • Q9XE93 (score: 0.543)
  • Q94ED2 (score: 0.541)
  • Q60EH3 (score: 0.134)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC16834 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000009549 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

BGLX

From SHIGELLACYC

E. coli O157

BGLX

From ECOO157CYC

edit table

See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Do-It-Yourself Web Tools


Notes

Families

[back to top]


Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00933

edit table

See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.



Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=bglX:Evolution&oldid=323367"