pGPS5: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
Smichinock (talk | contribs)
Smichinock (talk | contribs)
Line 34: Line 34:
pGPS5 is isolated from E. coli BW23474, an E. coli strain that expresses the pir-116 replication factor (4), by a standard plasmid purification procedure.
pGPS5 is isolated from E. coli BW23474, an E. coli strain that expresses the pir-116 replication factor (4), by a standard plasmid purification procedure.


==Sequence {{HelpIcon|Help:Plasmid}}==
==Sequence==
{{PlasmidSeq}}
      1  GGTACCCTGT GAATGCGCAA ACCAACCCTT GGCAGAACAT ATCCATCGCG
 
      51  TCCGCCATCT CCAGCAGCCG CACGCGGCGC ATCTCGGGCA GCGTTGGGTC
 
    101  CTGGCCACGG GTGCGCATGA TCGTGCTCCT GTCGTTGAGG ACCCGGCTAG
 
    151  GCTGGCGGGG TTGCCTTACT GGTTAGCAGA ATGAATCACC GATACGCGAG
 
    201  CGAACGTGAA GCGACTGCTG CTGCAAAACG TCTGCGACCT GAGCAACAAC
 
    251  ATGAATGGTC TTCGGTTTCC GTGTTTCGTA AAGTCTGGAA ACGCGGAAGT
 
    301  CAGCGCCCTG CACCATTATG TTCCGGATCT ATGTCGGGTG CGGAGAAAGA
 
    351  GGTAATGAAA TGGCAGATCC CTGGCTTGTT GTCCACAACC GTTAAACCTT
 
    401  AAAAGCTTTA AAAGCCTTAT ATATTCTTTT TTTTCTTATA AAACTTAAAA
 
    451  CCTTAGAGGC TATTTAAGTT GCTGATTTAT ATTAATTTTA TTGTTCAAAC
 
    501  ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTT AGCCATGAGA
 
    551  GCTTAGTACG TTAGCCATGA GGGTTTAGTT CGTTAAACAT GAGAGCTTAG
 
    601  TACGTTAAAC ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTA
 
    651  CTATCAACAG GTTGAACTGC TGATCTTCGG ATCTATGTCG GGTGCGGAGA
 
    701  AAGAGGTAAT GAAATGGCAT CCGGATCTGC ATCGCAGGAT GCTGCTGGCT
 
    751  ACCCTGTGGA ACACCTACAT CTGTATTAAC GAAGCGCTGG AGATGGCGGA
 
    801  CGCGATGGAT ATGTTCTGCC AAGGGTTGGT TTGCGCATTC ACAGTTCTCC
 
    851  GCAAGAATTG ATTGGCTCCA ATTCTTGGAG TGGTGAATCC GTTAGCGAGG
 
    901  TGCCGCCGGC TTCCATTCAG GTCGAGGTGG CCCGGCTCCA TGCACCGCGA
 
    951  CGCAACGCGG GGAGGCAGAC AAGGTATAGG GCGGCGCCTA CAATCCATGC
 
    1001  CAACCCGTTC CATGTGCTCG CCGAGGCGGC ATAAATCGCC GTGACGATCA
 
    1051  GCGGTCCAAT GATCGAAGTT AGGCTGGTAA GAGCCGCGAG CGATCCTTGA
 
    1101  AGCTGTCCCT GATGGTCGTC ATCTACCTGC CTGGACAGCA TGGCCTGCAA
 
    1151  CGCGGGCATC CCGATGCCGC CGGAAGCGAG AAGAATCATA ATGGGGAAGG
 
    1201  CCATCCAGCC TCGCGTCGCG AACGCCAGCA AGACGTAGCC CAGCGCGTCG
 
    1251  GCCGCCATGC CGGCGATAAT GGCCTGCTTC TCGCCGAAAC GTTTGGTGGC
 
    1301  GGGACCAGTG ACGAAGGCTT GAGCGAGGGC GTGCAAGATT CCGAATACCG
 
    1351  CAAGCGACAG GCCGATCATC GTCGCGCTCC AGCGAAAGCG GTCCTCGCCG
 
    1401  AAAATGACCC AGAGCGCTGC CGGCACCTGT CCTACGAGTT GCATGATAAA
 
    1451  GAAGACAGTC ATAAGTGCGG CGACAGTAGT CATGCCCCGC GCCCACCGGA
 
    1501  AGGAGCTGAC TGGGTTGAAG GCTCTCAAGG GCATCGGTCG ACGCTCTCCC
 
    1551  TTATGCGACT CCTGCATTAG GAAGCAGCCC AGTAGTAGGT TGAGGCCGTT
 
    1601  GAGCACCGCC GCCGCAAGGA ATGGTGCATG CAAGGAGATG GCGCCCAACA
 
    1651  GTCCCCCGGC CACGGGGCCT GCCACCATAC CCACGCCGAA ACAAGCGCTC
 
    1701  ATGAGCCCGA AGTGGCGAGC CCGATCTTCC CCATCGGTGA TGTCGGCGAT
 
    1751  ATAGGCGCCA GCAACCGCAC CTGTGGCGCC GGTGATGCCG GCCACGATGC
 
    1801  GTCCGGCGTA GAGGATCCAC AGGACGGGTG TGGTCGCCAT GATCGCGTAG
 
    1851  TCGATAGTGG CTCCAAGTAG CGAAGCGAGC AGGACTGGGC GGCGGCCAAA
 
    1901  GCGGTCGGAC AGTGCTCCGA GAACGGGTGC GCATAGAAAT TGCATCAACG
 
    1951  CATATAGCGC TAGCAGCACG CCATAGTGAC TGGCGATGCT GTCGGAATGG
 
    2001  ACGATATCCC GCAAGAGGCC CGGCAGTACC GGCATAACCA AGCCTATGCC
 
    2051  TACAGCATCC AGGGTGACGG TGCCGAGGAT GACGATGAGC GCATTGTTAG
 
    2101  ATTTCATACA CGGTGCCTGA CTGCGTTAGC AATTTAACTG TGATAAACTA
 
    2151  CCGCATTAAA GCTTATCGAT GATAAGCGCT GGCATTGACC CTGAGTGATT
 
    2201  TTTCTCTGGT CCCGCCGCAT CCATACCGCC AGTTGTTTAC CCTCACAACG
 
    2251  TTCCAGTAAC CGGGCATGTT CATCATCAGT AACCCGTATC GTGAGCATCC
 
    2301  TCTCTCGTTT CATCGGTATC ATTACCCCCA TGAACAGAAA TCCCCCTTAC
 
    2351  ACGGAGGCAT CAGTGACCAA ACAGGAAAAA ACCGCCCTTA ACATGGCCCG
 
    2401  CTTTATCAGA AGCCAGACAT TAACGCTTCT GGAGAAACTC AACGAGCTGG
 
    2451  ACGCGGATGA ACAGGCAGAG CTCTTACTGT CATGCCATCC GTATGTTTAA
 
    2501  ACACAATAAA GTCTTAAACT GAACAAAATA GATCTAAACT ATGACAATAA
 
    2551  AGTCTTAAAC TAGACAGAAT AGTTGTAAAC TGAAATCAGT CCAGTTATGC
 
    2601  TGTGAAAAAG CATACTGGAC TTTTGTTATG GCTAAAGCAA ACTCTTCATT
 
    2651  TTCTGAAGTG CAAATTGCCC GTCGTATTAA AGAGGGGCGT GGGGTCGACG
 
    2701  CGGCCGCTAA CTATAACGGT CCTAAGGTAG CGAGTTTGGC GCGCCAAACG
 
    2751  ATATCGGATC CGGCCGCCGC TGAGGTCTGC CTCGTGAAGA AGGTGTTGCT
 
    2801  GACTCATACC AGGCCTGAAT CGCCCCATCA TCCAGCCAGA AAGTGAGGGA
 
    2851  GCCACGGTTG ATGAGAGCTT TGTTGTAGGT GGACCAGTTG GTGATTTTGA
 
    2901  ACTTTTGCTT TGCCACGGAA CGGTCTGCGT TGTCGGGAAG ATGCGTGATC
 
    2951  TGATCCTTCA ACTCAGCAAG AGTTCGATTT ATTCAACAAA GCCGCCGTCC
 
    3001  CGTCAAGTCA GCGTAATGCT CTGCCAGTGT TACAACCAAT TAACCAATTC
 
    3051  TGATTAGAAA AACTCATCGA GCATCAAATG AAACTGCAAT TTATTCATAT
 
    3101  CAGGATTATC AATACCATAT TTTTGAAAAA GCCGTTTCTG TAATGAAGGA
 
    3151  GAAAACTCAC CGAGGCAGTT CCATAGGATG GCAAGATCCT GGTATCGGTC
 
    3201  TGCGATTCCG ACTCGTCCAA CATCAATACA ACCTATTAAT TTCCCCTCGT
 
    3251  CAAAAATAAG GTTATCAAGT GAGAAATCAC CATGAGTGAC GACTGAATCC
 
    3301  GGTGAGAATG GCAAAAGCTT ATGCATTTCT TTCCAGACTT GTTCAACAGG
 
    3351  CCAGCCATTA CGCTCGTCAT CAAAATCACT CGCATCAACC AAACCGTTAT
 
    3401  TCATTCGTGA TTGCGCCTGA GCGAGACGAA ATACGCGATC GCTGTTAAAA
 
    3451  GGACAATTAC AAACAGGAAT CGAATGCAAC CGGCGCAGGA ACACTGCCAG
 
    3501  CGCATCAACA ATATTTTCAC CTGAATCAGG ATATTCTTCT AATACCTGGA
 
    3551  ATGCTGTTTT CCCGGGGATC GCAGTGGTGA GTAACCATGC ATCATCAGGA
 
    3601  GTACGGATAA AATGCTTGAT GGTCGGAAGA GGCATAAATT CCGTCAGCCA
 
    3651  GTTTAGTCTG ACCATCTCAT CTGTAACATC ATTGGCAACG CTACCTTTGC
 
    3701  CATGTTTCAG AAACAACTCT GGCGCATCGG GCTTCCCATA CAATCGATAG
 
    3751  ATTGTCGCAC CTGATTGCCC GACATTATCG CGAGCCCATT TATACCCATA
 
    3801  TAAATCAGCA TCCATGTTGG AATTTAATCG CGGCCTCGAG CAAGACGTTT
 
    3851  CCCGTTGAAT ATGGCTCATA ACACCCCTTG TATTACTGTT TATGTAAGCA
 
    3901  GACAGTTTTA TTGTTCATGA TGATATATTT TTATCTTGTG CAATGTAACA
 
    3951  TCAGAGATTT TGAGACACAA CGTGGCTTAC TAGGATCCGA TATCATTTAA
 
    4001  ATCTAGGGAT AACAGGGTAA TACTAGTGTC GACCAACCAG ATAAGTGAAA
 
    4051  TCTAGTTCCA AACTATTTTG TCATTTTTAA TTTTCGTATT AGCTTACGAC
 
    4101  GCTACACCCA GTTCCCATCT ATTTTGTCAC TCTTCCCTAA ATAATCCTTA
 
    4151  AAAACTCCAT TTCCACCCCT CCCAGTTCCC AACTTTATTG TGTTTAAACA
 
    4201  CCGTAAGATG CTTTTCAGTG ACT


==Images {{HelpIcon|Help:Plasmid}}==
==Images {{HelpIcon|Help:Plasmid}}==

Revision as of 19:28, 3 September 2007

At a Glance

Type
Origin
Copy #
Markers
Link to Sequence
Comments
References
edit table



History

You can help EcoliWiki by writing about the history of this plasmid.

Sources

pGPS5 is isolated from E. coli BW23474, an E. coli strain that expresses the pir-116 replication factor (4), by a standard plasmid purification procedure.

Sequence

      1  GGTACCCTGT GAATGCGCAA ACCAACCCTT GGCAGAACAT ATCCATCGCG 
     51  TCCGCCATCT CCAGCAGCCG CACGCGGCGC ATCTCGGGCA GCGTTGGGTC 
    101  CTGGCCACGG GTGCGCATGA TCGTGCTCCT GTCGTTGAGG ACCCGGCTAG 
    151  GCTGGCGGGG TTGCCTTACT GGTTAGCAGA ATGAATCACC GATACGCGAG 
    201  CGAACGTGAA GCGACTGCTG CTGCAAAACG TCTGCGACCT GAGCAACAAC 
    251  ATGAATGGTC TTCGGTTTCC GTGTTTCGTA AAGTCTGGAA ACGCGGAAGT 
    301  CAGCGCCCTG CACCATTATG TTCCGGATCT ATGTCGGGTG CGGAGAAAGA 
    351  GGTAATGAAA TGGCAGATCC CTGGCTTGTT GTCCACAACC GTTAAACCTT 
    401  AAAAGCTTTA AAAGCCTTAT ATATTCTTTT TTTTCTTATA AAACTTAAAA 
    451  CCTTAGAGGC TATTTAAGTT GCTGATTTAT ATTAATTTTA TTGTTCAAAC 
    501  ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTT AGCCATGAGA 
    551  GCTTAGTACG TTAGCCATGA GGGTTTAGTT CGTTAAACAT GAGAGCTTAG 
    601  TACGTTAAAC ATGAGAGCTT AGTACGTGAA ACATGAGAGC TTAGTACGTA 
    651  CTATCAACAG GTTGAACTGC TGATCTTCGG ATCTATGTCG GGTGCGGAGA 
    701  AAGAGGTAAT GAAATGGCAT CCGGATCTGC ATCGCAGGAT GCTGCTGGCT 
    751  ACCCTGTGGA ACACCTACAT CTGTATTAAC GAAGCGCTGG AGATGGCGGA 
    801  CGCGATGGAT ATGTTCTGCC AAGGGTTGGT TTGCGCATTC ACAGTTCTCC 
    851  GCAAGAATTG ATTGGCTCCA ATTCTTGGAG TGGTGAATCC GTTAGCGAGG 
    901  TGCCGCCGGC TTCCATTCAG GTCGAGGTGG CCCGGCTCCA TGCACCGCGA 
    951  CGCAACGCGG GGAGGCAGAC AAGGTATAGG GCGGCGCCTA CAATCCATGC 
   1001  CAACCCGTTC CATGTGCTCG CCGAGGCGGC ATAAATCGCC GTGACGATCA 
   1051  GCGGTCCAAT GATCGAAGTT AGGCTGGTAA GAGCCGCGAG CGATCCTTGA 
   1101  AGCTGTCCCT GATGGTCGTC ATCTACCTGC CTGGACAGCA TGGCCTGCAA 
   1151  CGCGGGCATC CCGATGCCGC CGGAAGCGAG AAGAATCATA ATGGGGAAGG 
   1201  CCATCCAGCC TCGCGTCGCG AACGCCAGCA AGACGTAGCC CAGCGCGTCG 
   1251  GCCGCCATGC CGGCGATAAT GGCCTGCTTC TCGCCGAAAC GTTTGGTGGC 
   1301  GGGACCAGTG ACGAAGGCTT GAGCGAGGGC GTGCAAGATT CCGAATACCG 
   1351  CAAGCGACAG GCCGATCATC GTCGCGCTCC AGCGAAAGCG GTCCTCGCCG 
   1401  AAAATGACCC AGAGCGCTGC CGGCACCTGT CCTACGAGTT GCATGATAAA 
   1451  GAAGACAGTC ATAAGTGCGG CGACAGTAGT CATGCCCCGC GCCCACCGGA 
   1501  AGGAGCTGAC TGGGTTGAAG GCTCTCAAGG GCATCGGTCG ACGCTCTCCC 
   1551  TTATGCGACT CCTGCATTAG GAAGCAGCCC AGTAGTAGGT TGAGGCCGTT 
   1601  GAGCACCGCC GCCGCAAGGA ATGGTGCATG CAAGGAGATG GCGCCCAACA 
   1651  GTCCCCCGGC CACGGGGCCT GCCACCATAC CCACGCCGAA ACAAGCGCTC 
   1701  ATGAGCCCGA AGTGGCGAGC CCGATCTTCC CCATCGGTGA TGTCGGCGAT 
   1751  ATAGGCGCCA GCAACCGCAC CTGTGGCGCC GGTGATGCCG GCCACGATGC 
   1801  GTCCGGCGTA GAGGATCCAC AGGACGGGTG TGGTCGCCAT GATCGCGTAG 
   1851  TCGATAGTGG CTCCAAGTAG CGAAGCGAGC AGGACTGGGC GGCGGCCAAA 
   1901  GCGGTCGGAC AGTGCTCCGA GAACGGGTGC GCATAGAAAT TGCATCAACG 
   1951  CATATAGCGC TAGCAGCACG CCATAGTGAC TGGCGATGCT GTCGGAATGG 
   2001  ACGATATCCC GCAAGAGGCC CGGCAGTACC GGCATAACCA AGCCTATGCC 
   2051  TACAGCATCC AGGGTGACGG TGCCGAGGAT GACGATGAGC GCATTGTTAG 
   2101  ATTTCATACA CGGTGCCTGA CTGCGTTAGC AATTTAACTG TGATAAACTA 
   2151  CCGCATTAAA GCTTATCGAT GATAAGCGCT GGCATTGACC CTGAGTGATT 
   2201  TTTCTCTGGT CCCGCCGCAT CCATACCGCC AGTTGTTTAC CCTCACAACG 
   2251  TTCCAGTAAC CGGGCATGTT CATCATCAGT AACCCGTATC GTGAGCATCC 
   2301  TCTCTCGTTT CATCGGTATC ATTACCCCCA TGAACAGAAA TCCCCCTTAC 
   2351  ACGGAGGCAT CAGTGACCAA ACAGGAAAAA ACCGCCCTTA ACATGGCCCG 
   2401  CTTTATCAGA AGCCAGACAT TAACGCTTCT GGAGAAACTC AACGAGCTGG 
   2451  ACGCGGATGA ACAGGCAGAG CTCTTACTGT CATGCCATCC GTATGTTTAA 
   2501  ACACAATAAA GTCTTAAACT GAACAAAATA GATCTAAACT ATGACAATAA 
   2551  AGTCTTAAAC TAGACAGAAT AGTTGTAAAC TGAAATCAGT CCAGTTATGC 
   2601  TGTGAAAAAG CATACTGGAC TTTTGTTATG GCTAAAGCAA ACTCTTCATT 
   2651  TTCTGAAGTG CAAATTGCCC GTCGTATTAA AGAGGGGCGT GGGGTCGACG 
   2701  CGGCCGCTAA CTATAACGGT CCTAAGGTAG CGAGTTTGGC GCGCCAAACG 
   2751  ATATCGGATC CGGCCGCCGC TGAGGTCTGC CTCGTGAAGA AGGTGTTGCT 
   2801  GACTCATACC AGGCCTGAAT CGCCCCATCA TCCAGCCAGA AAGTGAGGGA 
   2851  GCCACGGTTG ATGAGAGCTT TGTTGTAGGT GGACCAGTTG GTGATTTTGA 
   2901  ACTTTTGCTT TGCCACGGAA CGGTCTGCGT TGTCGGGAAG ATGCGTGATC 
   2951  TGATCCTTCA ACTCAGCAAG AGTTCGATTT ATTCAACAAA GCCGCCGTCC 
   3001  CGTCAAGTCA GCGTAATGCT CTGCCAGTGT TACAACCAAT TAACCAATTC 
   3051  TGATTAGAAA AACTCATCGA GCATCAAATG AAACTGCAAT TTATTCATAT 
   3101  CAGGATTATC AATACCATAT TTTTGAAAAA GCCGTTTCTG TAATGAAGGA 
   3151  GAAAACTCAC CGAGGCAGTT CCATAGGATG GCAAGATCCT GGTATCGGTC 
   3201  TGCGATTCCG ACTCGTCCAA CATCAATACA ACCTATTAAT TTCCCCTCGT 
   3251  CAAAAATAAG GTTATCAAGT GAGAAATCAC CATGAGTGAC GACTGAATCC 
   3301  GGTGAGAATG GCAAAAGCTT ATGCATTTCT TTCCAGACTT GTTCAACAGG 
   3351  CCAGCCATTA CGCTCGTCAT CAAAATCACT CGCATCAACC AAACCGTTAT 
   3401  TCATTCGTGA TTGCGCCTGA GCGAGACGAA ATACGCGATC GCTGTTAAAA 
   3451  GGACAATTAC AAACAGGAAT CGAATGCAAC CGGCGCAGGA ACACTGCCAG 
   3501  CGCATCAACA ATATTTTCAC CTGAATCAGG ATATTCTTCT AATACCTGGA 
   3551  ATGCTGTTTT CCCGGGGATC GCAGTGGTGA GTAACCATGC ATCATCAGGA 
   3601  GTACGGATAA AATGCTTGAT GGTCGGAAGA GGCATAAATT CCGTCAGCCA 
   3651  GTTTAGTCTG ACCATCTCAT CTGTAACATC ATTGGCAACG CTACCTTTGC 
   3701  CATGTTTCAG AAACAACTCT GGCGCATCGG GCTTCCCATA CAATCGATAG 
   3751  ATTGTCGCAC CTGATTGCCC GACATTATCG CGAGCCCATT TATACCCATA 
   3801  TAAATCAGCA TCCATGTTGG AATTTAATCG CGGCCTCGAG CAAGACGTTT 
   3851  CCCGTTGAAT ATGGCTCATA ACACCCCTTG TATTACTGTT TATGTAAGCA 
   3901  GACAGTTTTA TTGTTCATGA TGATATATTT TTATCTTGTG CAATGTAACA 
   3951  TCAGAGATTT TGAGACACAA CGTGGCTTAC TAGGATCCGA TATCATTTAA 
   4001  ATCTAGGGAT AACAGGGTAA TACTAGTGTC GACCAACCAG ATAAGTGAAA 
   4051  TCTAGTTCCA AACTATTTTG TCATTTTTAA TTTTCGTATT AGCTTACGAC 
   4101  GCTACACCCA GTTCCCATCT ATTTTGTCAC TCTTCCCTAA ATAATCCTTA 
   4151  AAAACTCCAT TTCCACCCCT CCCAGTTCCC AACTTTATTG TGTTTAAACA 
   4201  CCGTAAGATG CTTTTCAGTG ACT

Images

You can help EcoliWiki by providing images of this plasmid.

References

See Help:References for how to manage references in EcoliWiki.