Membrane Protein Data Bank (MPDB): Difference between revisions
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==Browsing== | ==Browsing== | ||
==Searching== | ==Searching== | ||
The MPDB provides better searching then the PDB. Searching in the MPDB allowed for more flexibility and discriminiating query. Under the main [http://www.lipidat.chemistry.ohio-state.edu/MPDB/SearchStart.htm search]page, there are some standard searches. Due to its limited size, the curators of the database have implemented pull-down menu for searching by author. Additionally, there is a pull-down menu for co-crystalants, crystallization method, position in membrane, technique, expression system, family, function, jouranl, name and other conditions. | |||
For a more customized search, the user can select [http://www.lipidat.chemistry.ohio-state.edu/MPDB/customseach.asp Customized Search] from the main [http://www.lipidat.chemistry.ohio-state.edu/MPDB/SearchStart.htm Search] area. | |||
==Usage examples== | ==Usage examples== | ||
Revision as of 07:56, 1 July 2006
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| Membrane Protein Data Bank (MPDB) | |
| Who: | Martin Caffrey |
| What: | A database for membrane proteins |
| Where: | Membrane Protein Data Bank (MPDB) |
| Updates | The MPDB is updated weekly. |
| Upcoming events | link to event calendar, if applicable |
| Web Services | |
About Membrane Protein Data Bank (MPDB)
The Membrane Protein Data Bank or MPDB is a publicly available database that contains structural information on integral, peripheral and anchored membrane proteins as well as peptides. The data included comes from the Protein Database, as well as literature and other databases.
Content
The MPDB contains structural information relating to membrane proteins and peptides. The structures in the database are based on X-ray and electron diffraction, Nuclear manetic resonance and cryo-electron microscopy.
Using Membrane Protein Data Bank (MPDB)
Browsing
Searching
The MPDB provides better searching then the PDB. Searching in the MPDB allowed for more flexibility and discriminiating query. Under the main searchpage, there are some standard searches. Due to its limited size, the curators of the database have implemented pull-down menu for searching by author. Additionally, there is a pull-down menu for co-crystalants, crystallization method, position in membrane, technique, expression system, family, function, jouranl, name and other conditions.
For a more customized search, the user can select Customized Search from the main Search area.
Usage examples
Other people have used the MPDB as shown in the following citations:
Technology
Web Services/API
Discussion
References
Raman, P., Cherezov, V., Caffrey, M. 2006. The Membrane Protein Data Bank. Cell Mol. Life Sci. 63: 36-51 PDF
External Links
Membrane Protein Data Bank (MPDB)