dsdC:Gene Product(s): Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
Newer edit →
imported>WikiEntryBot
Automated import of articles
 
imported>WikiEntryBot
Automated import of articles
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|dsdC}}{{Tab|Gene|dsdC}}{{Tab On|Gene Product(s)|dsdC}}{{Tab|Expression|dsdC}}{{Tab|Evolution|dsdC}}{{Tab|On One Page|dsdC}}{{TabsBottom}}
{{Tab|Quickview|dsdC}}{{Tab|Gene|dsdC}}{{Tab On|Gene Product(s)|dsdC}}{{Tab|Expression|dsdC}}{{Tab|Evolution|dsdC}}{{Tab|On One Page|dsdC}}{{TabsBottom}}
Line 16: Line 25:
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
</noinclude>
</noinclude>[[Category:GO:0009063_!_amino acid catabolic process]][[Category:GO:0006350_!_transcription]][[Category:GO:0005737_!_cytoplasm]][[Category:GO:0016563_!_transcription activator activity]]
==Nomenclature==
==Nomenclature==
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469ff1728cace-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37a0d98b-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|{{Prettytable}}
{|{{Prettytable}}
Line 28: Line 37:
!{{table heading style}} |Synonyms
!{{table heading style}} |Synonyms
|
|
DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B2364<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DsdX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DsdC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, D-serine dehydratase (deaminase) transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
DNA-binding transcriptional dual regulator product<ref name='LIB:Riley_2006'/>, B2364 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DsdC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, D-serine dehydratase (deaminase) transcriptional activator product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
|-
|-
!{{table heading style}} |Product description
!{{table heading style}} |Product description
|
|
DsdC transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/>; DsdC transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/>
DsdC transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


|-
|-
Line 39: Line 48:
*
*
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..O469ff1728cace&page=&pagename={{FULLPAGENAMEE}} edit table]
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37a0d98b&page=24953&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469ff1728cace-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37a0d98b-->
{{Product_nomenclature_help}}
{{Product_nomenclature_help}}
<protect><!--Nomenclature_notes--></protect>
<protect><!--Nomenclature_notes--></protect>
Line 48: Line 57:


==Function==
==Function==
{{BacktoTop}}
<protect>
<protect>
===Gene Ontology===
<big>'''Gene Ontology'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79..S469ff1733be24-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37b1fd37-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='48761'  
{|class = 'sortable' {{Prettytable}} id='168845'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
!Qualifier!!GO ID!!GO term name!!Reference(s)!!Evidence Code!!with/from!!Aspect!!Notes!!Status
Line 118: Line 128:
GO:0016563  
GO:0016563  
|
|
transcriptional activator activity  
transcription activator activity  
|
|
   
   
Line 132: Line 142:
required fields missing   
required fields missing   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..S469ff1733be24&page=&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37b1fd37&page=24953&pagename={{FULLPAGENAMEE}} edit table] || || || || || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..S469ff1733be24-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.N46aaa37b1fd37-->
{{Product_GO_help}}
{{Product_GO_help}}
===Interactions===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..G469ff17a2bee3-->
<span id="Interactions"></span><big>'''Interactions'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.E46aaa38c2adf1-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='48762'  
{|class = 'sortable' {{Prettytable}} id='168846'  
|- {{table heading style}}
|- {{table heading style}}
!Partner Type!!Partner!!Notes
!Partner Type!!Partner!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..G469ff17a2bee3&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.E46aaa38c2adf1&page=24953&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..G469ff17a2bee3-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.E46aaa38c2adf1-->
{{Product_interactions_help}}
{{Product_interactions_help}}
<!--Function_notes--></protect>
<!--Function_notes--></protect>
===Notes===
===Notes===


==Localization==
==Localization==
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac3bb61f-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='114497'
|- {{table heading style}}
!Compartment!!Description!!Evidence!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac3bb61f&page=24953&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac3bb61f-->
<protect><!--Localization_notes--></protect>


<protect><!--Localization_notes--></protect>
===Notes===
===Notes===


==Structure and Physical Properties==
==Structure and Physical Properties==
{{BacktoTop}}
<protect>
<protect>
===Physical Properties===
<span id="Sequence"></span><big>'''Physical Properties'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469ff17b63eb4-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.G46aaa38e1212c-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|{{Prettytable}}
{|{{Prettytable}}
Line 184: Line 207:
55920 - 56545 (calc based on 8 Y, 8 W, and 5 C residues)  
55920 - 56545 (calc based on 8 Y, 8 W, and 5 C residues)  
|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..O469ff17b63eb4&page=&pagename={{FULLPAGENAMEE}} edit table]
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.G46aaa38e1212c&page=24953&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469ff17b63eb4-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.G46aaa38e1212c-->
{{Product_physical_properties_help}}
{{Product_physical_properties_help}}
===Domains/Motifs/Modification Sites===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..C469ff17b825af-->
<big>'''Domains/Motifs/Modification Sites'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.J46aaa38e804c5-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='48764'  
{|class = 'sortable' {{Prettytable}} id='168848'  
|- {{table heading style}}
|- {{table heading style}}
!Type!!Residues!!Description!!Notes
!Type!!Residues!!Description!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..C469ff17b825af&page=&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.J46aaa38e804c5&page=24953&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..C469ff17b825af-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.J46aaa38e804c5-->
{{Product_domains_motifs_help}}
{{Product_domains_motifs_help}}
===Structure===


<span id="Structure"></span><big>'''Structure'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac5c3f09-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='114498'
|- {{table heading style}}
!Structure Type!!Organism!!Accession!!Residues covered!!Notes
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac5c3f09&page=24953&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.X46a83ac5c3f09-->
{{Product_structure_help}}
{{Product_structure_help}}
<!--Structure_notes--></protect>
<!--Structure_notes--></protect>
Line 207: Line 240:


==Gene Product Resources==
==Gene Product Resources==
<!--box uid=421aa90e079fa326b6494f812ad13e79..D469ff17b9d87d-->
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.X46aaa38f47912-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='48765'  
{|class = 'sortable' {{Prettytable}} id='168849'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Resource type!!Source!!Notes/Reference
!Resource type!!Source!!Notes/Reference
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..D469ff17b9d87d&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.X46aaa38f47912&page=24953&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..D469ff17b9d87d-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.X46aaa38f47912-->
{{Product_resources_help}}
{{Product_resources_help}}
<protect><!--Resources_notes--></protect>
<protect><!--Resources_notes--></protect>
===Notes===
===Notes===


==Accessions in Other Databases==
==Accessions in Other Databases==
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469ff17bb7073-->
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.P46aaa38fa502c-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='48766'  
{|class = 'sortable' {{Prettytable}} id='168850'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!Database!!Accession!!Notes
Line 269: Line 305:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..O469ff17bb7073&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.P46aaa38fa502c&page=24953&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..O469ff17bb7073-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.P46aaa38fa502c-->
{{Product_accessions_help}}
{{Product_accessions_help}}
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
Line 278: Line 314:


==Links==
==Links==
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.L46a83acb61361-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='114499'
|- {{table_heading_style}}
!Name!!URL!!Comments
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.24953.L46a83acb61361&page=24953&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.24953.L46a83acb61361-->
{{Links_help}}
<noinclude>


<noinclude>
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references/>
__NOTOC__
__NOTOC__
[[Category:GO:0009063]][[Category:GO:0006350]][[Category:GO:0005737]][[Category:GO:0016563]]</noinclude>
</noinclude>

Revision as of 14:26, 28 July 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Nomenclature Function Interactions Localization Sequence Structure Resources Accessions Links References Suggestions

Nomenclature

Standard name

DsdC product

Synonyms

DNA-binding transcriptional dual regulator product[1], B2364 product[2][1], DsdC product[2][1], D-serine dehydratase (deaminase) transcriptional activator product[2][1]

Product description

DsdC transcriptional dual regulator[2][3]

EC number (for enzymes)
edit table

See Help:Product_nomenclature for help entering or editing information in this section of EcoliWiki.

Notes

Function

[back to top]


Gene Ontology

Qualifier GO ID GO term name Reference(s) Evidence Code with/from Aspect Notes Status

GO:0009063

amino acid catabolic process

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0006350

transcription

P

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0005737

cytoplasm

C

Seeded from EcoCyc 11.1[3].

required fields missing

GO:0016563

transcription activator activity

F

Seeded from EcoCyc 11.1[3].

required fields missing

edit table

See Help:Gene_ontology for help entering or editing GO terms and GO annotations in EcoliWiki.

Interactions

Partner Type Partner Notes
edit table

See Help:Product_interactions for help entering or editing information about gene product interactions in this section of EcoliWiki.

Notes

Localization

Compartment Description Evidence Notes
edit table


Notes

Structure and Physical Properties

[back to top]


Physical Properties

Sequence

at EcoCyc 

MEPLREIRNR LLNGWQLSKM HTFEVAARHQ SFALAAEELS LSPSAVSHRI NQLEEELGIQ
LFVRSHRKVE LTHEGKRVYW ALKSSLDTLN QEILDIKNQE LSGTLTLYSR PSIAQCWLVP
ALGDFTRRYP SISLTVLTGN DNVNLQRAGI DLAIYFDDAP SAQLTHHFLM DEEILPVCSP
EYAQRHALTN TVINLCHCTL LHDRQAWSND SGTDEWHSWA QHYAVNLPTS SGIGFDRSDL
AVIAAMNHIG VAMGRKRLVQ KRLASGELVA PFGDMTVKCH QHYYITTLPG RQWPKIEAFI
IWLREQVKTT S
Mol. Wt

35.33 kDa (calc) [2]

pI

6.88[2]

Extinction coefficient

55920 - 56545 (calc based on 8 Y, 8 W, and 5 C residues)

edit table

See Help:Product_physical_properties for help entering or editing information about the physical properties of this gene product.

Domains/Motifs/Modification Sites

Type Residues Description Notes
edit table

See Help:Product_domains_motifs for help entering or editing information in this section of EcoliWiki.

Structure

Structure Type Organism Accession Residues covered Notes
edit table

See Help:Product_structure for help entering or editing information in this section of EcoliWiki.

Notes

Gene Product Resources

[back to top]


Resource type Source Notes/Reference
edit table

See Help:Product_resources for help with entering or editing information in this section of EcoliWiki.

Notes

Accessions in Other Databases

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:PD00297

UniProt (EcoliWiki Page)

UniProt:P46068

PFAM (EcoliWiki Page)

PFAM:PF00126

RefSeq (EcoliWiki Page)

RefSeq:NP_416865

ModBase (EcoliWiki Page)

ModBase:P46068

ECOO157CYC (EcoliWiki Page)

ECOO157CYC:Z0885-MONOMER

edit table

See Help:Product_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.


References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=dsdC:Gene_Product(s)&oldid=185321"