speC:Expression: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
imported>WikiEntryBot
Automated import of articles
imported>WikiEntryBot
Automated import of articles
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|speC}}{{Tab|Gene|speC}}{{Tab|Gene Product(s)|speC}}{{Tab On|Expression|speC}}{{Tab|Evolution|speC}}{{Tab|On One Page|speC}}{{TabsBottom}}
{{Tab|Quickview|speC}}{{Tab|Gene|speC}}{{Tab|Gene Product(s)|speC}}{{Tab On|Expression|speC}}{{Tab|Evolution|speC}}{{Tab|On One Page|speC}}{{TabsBottom}}
Line 13: Line 22:
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
</noinclude>[[Category:Txn_unit:speC]]
[[Category:Txn_unit:speC]]
</noinclude>
==Overview==
==Overview==
{{Expression_overview_placeholder}}
{{Expression_overview_placeholder}}
==Transcription and Transcriptional Regulation==
==Transcription and Transcriptional Regulation==
{{BacktoTop}}
<protect>
<protect>
{|{{Prettytable}}
{|{{Prettytable}}
|-
|-
|<!--box uid=421aa90e079fa326b6494f812ad13e79..C46a053aa31409-->
|<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.M46ab718ecbb3c-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='78794'  
{|class = 'sortable' {{Prettytable}} id='199713'  
|- {{table heading style}}
|- {{table heading style}}
!Transcription unit(s)
!Transcription unit(s)
Line 29: Line 40:
[[:Category:Txn_unit:speC|speC]]  
[[:Category:Txn_unit:speC|speC]]  
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..C46a053aa31409&page=&pagename={{FULLPAGENAMEE}} edit table]
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.40218.M46ab718ecbb3c&page=40218&pagename={{FULLPAGENAMEE}} edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..C46a053aa31409-->||{{RegulonDBfig|ECK120000950.jpg|SPEC}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.M46ab718ecbb3c-->||{{RegulonDBfig|ECK120000950.jpg|SPEC}}
|}
|}
{{expression_transcription_help}}
{{expression_transcription_help}}
Line 39: Line 50:


==Translation and Regulation of Translation==
==Translation and Regulation of Translation==
{{BacktoTop}}
<protect>{{GBrowseFigureByCoord|3107157|3107197|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
<protect>{{GBrowseFigureByCoord|3107157|3107197|ecoli|MG1655|Genes_unlabeled+DNA_unlabeled+flip|400|{{Nterm_closeup}} }}
{{Expression_translation_help}}
<!--Translation_notes--></protect>
<!--Translation_notes--></protect>
===Notes===
{{Expression_translation_placeholder}}
{{Expression_translation_placeholder}}


==Turnover and Regulation of Turnover==
==Turnover and Regulation of Turnover==
<!--Turnover_notes--></protect>
===Notes===
{{Expression_turnover_placeholder}}
{{Expression_turnover_placeholder}}


==Experimental==
==Experimental==
{{BacktoTop}}
<protect>
<protect>
===Mutations Affecting Expression===
<big>'''Mutations Affecting Expression'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79..H46a053aa9c086-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.P46ab718f9893d-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='78795'  
{|class = 'sortable' {{Prettytable}} id='199714'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
!Allele Name!!Mutation!!Phenotype!!Reference
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..H46a053aa9c086&page=&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.40218.P46ab718f9893d&page=40218&pagename={{FULLPAGENAMEE}} edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..H46a053aa9c086-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.P46ab718f9893d-->
{{Expression_allele_table_help}}
{{Expression_allele_table_help}}
===Expression Studies===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..A46a053aac30a1-->
<big>'''Expression Studies'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.Y46ab71901671b-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='78796'  
{|class = 'sortable' {{Prettytable}} id='199715'  
|- {{table heading style}}
|- {{table heading style}}
!Type!!Reference!!Notes
!Type!!Reference!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..A46a053aac30a1&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.40218.Y46ab71901671b&page=40218&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..A46a053aac30a1-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.Y46ab71901671b-->
{{Expression_studies_table_help}}
{{Expression_studies_table_help}}
===Expression Resources===
 
<!--box uid=421aa90e079fa326b6494f812ad13e79..J46a053aae9cf2-->
<big>'''Expression Resources'''</big>
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.V46ab719082558-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='78797'  
{|class = 'sortable' {{Prettytable}} id='199716'  
|- {{table heading style}}
|- {{table heading style}}
!Resource Name!!Resource Type!!Description!!Source!!Notes
!Resource Name!!Resource Type!!Description!!Source!!Notes
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..J46a053aae9cf2&page=&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.40218.V46ab719082558&page=40218&pagename={{FULLPAGENAMEE}} edit table] || || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..J46a053aae9cf2-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.V46ab719082558-->
{{Expression_resource_table_help}}
{{Expression_resource_table_help}}
<protect><!--Expression_experimental_notes--></protect>
<protect><!--Expression_experimental_notes--></protect>
Line 86: Line 104:




==Accessions Related to speC Expression==
==Accessions Related to ''speC'' Expression==
<!--box uid=421aa90e079fa326b6494f812ad13e79..M46a053ab1e6a2-->
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.M46ab7190f15cf-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='78798'  
{|class = 'sortable' {{Prettytable}} id='199717'  
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!Database!!Accession!!Notes
Line 121: Line 140:
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..M46a053ab1e6a2&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.40218.M46ab7190f15cf&page=40218&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..M46a053ab1e6a2-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.M46ab7190f15cf-->
{{Expression_accessions_table_help}}
{{Expression_accessions_table_help}}
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
{{EXPRESSION_ACCESSIONS_NOTES}}
 


==Links==
==Links==
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.C46a7ce7f3cb39-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.C46a7ce7f3cb39-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. ***  -->
{|class = 'sortable' {{Prettytable}} id='105282'  
{|class = 'sortable' {{Prettytable}} id='105282'  
|-
|- {{table_heading_style}}
!
!Name!!URL!!Comments
|-
|
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.40218.C46a7ce7f3cb39&page=40218&pagename={{FULLPAGENAMEE}} edit table]
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.40218.C46a7ce7f3cb39&page=40218&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.C46a7ce7f3cb39-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.40218.C46a7ce7f3cb39-->
{{Links_help}}
<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references/>
__NOTOC__
__NOTOC__
</noinclude>
</noinclude>

Revision as of 16:40, 28 July 2007

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

[back to top]


Transcription unit(s)

speC

edit table
Figure courtesy of RegulonDB

See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


gbrowse_img.php?coord=3107157..3107197&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled+flip&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


Mutations Affecting Expression

Allele Name Mutation Phenotype Reference
edit table

See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Expression Studies

Type Reference Notes
edit table

See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Expression Resources

Resource Name Resource Type Description Source Notes
edit table

See Help:Expression_resources for help entering or editing information in this section of EcoliWiki. <protect>

Notes

Accessions Related to speC Expression

[back to top]


Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:EG10961

EchoBASE (EcoliWiki Page)

EchoBASE:EB0954

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2965

EcoGene (EcoliWiki Page)

EcoGene:EG10961

edit table

See Help:Expression_accessions for help entering or editing information in this section of EcoliWiki.

Notes

Links

[back to top]


Name URL Comments
edit table

See Help:Links_table for how to enter or edit information in this section of EcoliWiki.

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=speC:Expression&oldid=175451"