yggX:Expression: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Autoupdate of RegulonDB links.
touch
Line 36: Line 36:
*  
*  
****************************************************************************************** -->{{Help Cellular levels}}
****************************************************************************************** -->{{Help Cellular levels}}
{|   id="Y49c03e5b2a4d6"  class=" tableEdit MoleculesPerCellTable"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y49c03e5b2a4d6"  class=" tableEdit MoleculesPerCellTable"   
|- align='left' bgcolor='#CCCCFF'
|- align='left' bgcolor='#CCCCFF'
!|Molecule!!Organism or Strain!!Value!!Units!!Experimental Conditions!!Assay used!!Notes!!Reference(s)
!|Molecule!!Organism or Strain!!Value!!Units!!Experimental Conditions!!Assay used!!Notes!!Reference(s)
Line 119: Line 119:
*  
*  
****************************************************************************************** -->{{expression_transcription_help}}
****************************************************************************************** -->{{expression_transcription_help}}
{|   id="W46ab717eb4051"  class=" tableEdit Expression_operons_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46ab717eb4051"  class=" tableEdit Expression_operons_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Transcription unit(s)
!|Transcription unit(s)
Line 182: Line 182:
*  
*  
****************************************************************************************** -->{{Expression_allele_table_help}}
****************************************************************************************** -->{{Expression_allele_table_help}}
{|   id="Q46ab717f89af9"  class=" tableEdit Expression_allele_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46ab717f89af9"  class=" tableEdit Expression_allele_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Allele Name!!Mutation!!Phenotype!!Reference
!|Allele Name!!Mutation!!Phenotype!!Reference
Line 200: Line 200:
*  
*  
****************************************************************************************** -->{{Expression_studies_table_help}}
****************************************************************************************** -->{{Expression_studies_table_help}}
{|   id="Q46ab718003aca"  class=" tableEdit Expression_studies_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Q46ab718003aca"  class=" tableEdit Expression_studies_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Type!!Reference!!Notes
!|Type!!Reference!!Notes
Line 232: Line 232:
*  
*  
****************************************************************************************** -->{{Expression_resource_table_help}}
****************************************************************************************** -->{{Expression_resource_table_help}}
{|   id="F46ab718073480"  class=" tableEdit Expression_resource_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46ab718073480"  class=" tableEdit Expression_resource_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Resource Name!!Resource Type!!Description!!Source!!Notes
!|Resource Name!!Resource Type!!Description!!Source!!Notes
Line 254: Line 254:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="A46ab7180e673d"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46ab7180e673d"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])
[[EcoCyc]]
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7532 EcoCyc:G7532]
EcoCyc:G7532
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])
[[EchoBASE]]
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB2809 EchoBASE:EB2809]
EchoBASE:EB2809
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-  
|-  
|
|
Line 280: Line 280:
|-  
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])
[[EcoGene]]
|
EcoGene:EG12984
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]  
|-
|
[[RegulonDB]]
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG12984 EcoGene:EG12984]
RegulonDB:ECK120004093
|
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0009722
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 304: Line 318:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="M46a7ce74144fe"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46a7ce74144fe"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Revision as of 08:23, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.


Cellular Levels

[back to top]


See Help:Cellular levels

Molecule Organism or Strain Value Units Experimental Conditions Assay used Notes Reference(s)

Protein

Ecoli K-12

187.667+/-0.802

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Growth Rate(min): *
  • other: *

Single Molecule Fluorescence

PMID:20671182[1]

mRNA

Ecoli K-12

0.06113+/-0.00812

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Growth Rate(min): *
  • other: *

by FISH

PMID:20671182[1]

mRNA

Ecoli K-12

0.138181818

Molecules/cell

  • Medium:
  • Temperature (°C):
  • Growth Rate(min): *
  • other: *

by RNA_Seq

PMID:20671182[1]

edit table

Notes

Transcription and Transcriptional Regulation

[back to top]


See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

mutY-yggX-mltC

mutY-yggX

yggX-mltC

yggX

yggX-mltC-nupG

mutY-yggX-mltC-nupG

edit table
Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


<gbrowseImage> name=NC_000913:3102095..3102135 source=MG1655 type=Gene+DNA_+Protein preset=Nterminus </gbrowseImage> This picture shows the sequence around the N-terminus.


Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2962 (EcoliWiki Page)

NCBI GEO profiles for yggX

microarray

GenExpDB:b2962 (EcoliWiki Page)

Summary of data for yggX from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes
edit table

<protect>

Notes

Accessions Related to yggX Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc

EcoCyc:G7532

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2809

Escherichia coli str. K-12 substr. MG1655

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2962

EcoGene

EcoGene:EG12984

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004093

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009722

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 Taniguchi, Y et al. (2010) Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329 533-8 PubMed

Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yggX:Expression&oldid=1387372"