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!align=left |Citation | |||
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'''Angiuoli, SV, Dunning Hotopp, JC, Salzberg, SL and Tettelin, H''' (2011) Improving pan-genome annotation using whole genome multiple alignment. ''BMC Bioinformatics'' '''12''':272 | |||
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!align=left |Abstract | |||
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Rapid annotation and comparisons of genomes from multiple isolates (pan-genomes) is becoming commonplace due to advances in sequencing technology. Genome annotations can contain inconsistencies and errors that hinder comparative analysis even within a single species. Tools are needed to compare and improve annotation quality across sets of closely related genomes. | |||
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!align=left |Links | |||
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=21718539 PubMed] [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142524 PMC3142524] | |||
Online version:[http://dx.doi.org/10.1186/1471-2105-12-272 10.1186/1471-2105-12-272] | |||
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!align=left |Keywords | |||
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Bacteria/genetics; Chromosome Mapping; Genome, Bacterial; Molecular Sequence Annotation; Sequence Alignment/methods | |||
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==Significance {{HelpIcon|Help:Literature}} == | |||
{{LitSignificance}} | |||
== Useful Materials and Methods {{HelpIcon|Help:Literature}}== | |||
{{LitMaterials}} | |||
==Annotations {{HelpIcon|Help:Literature}}== | |||
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!|Gene product!!Qualifier!!GO ID!!GO term name!!Evidence Code!!with/from!!Aspect!!Notes!!Status | |||
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==EcoliWiki Links {{HelpIcon|Help:Literature}} == | |||
{{LitLinks}} | |||
==See also== | |||
==References== | |||
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Revision as of 20:36, 8 April 2013
| Citation |
Angiuoli, SV, Dunning Hotopp, JC, Salzberg, SL and Tettelin, H (2011) Improving pan-genome annotation using whole genome multiple alignment. BMC Bioinformatics 12:272 |
|---|---|
| Abstract |
Rapid annotation and comparisons of genomes from multiple isolates (pan-genomes) is becoming commonplace due to advances in sequencing technology. Genome annotations can contain inconsistencies and errors that hinder comparative analysis even within a single species. Tools are needed to compare and improve annotation quality across sets of closely related genomes. |
| Links |
PubMed PMC3142524 Online version:10.1186/1471-2105-12-272 |
| Keywords |
Bacteria/genetics; Chromosome Mapping; Genome, Bacterial; Molecular Sequence Annotation; Sequence Alignment/methods |
| edit table |
Significance
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Useful Materials and Methods
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Annotations
| Gene product | Qualifier | GO ID | GO term name | Evidence Code | with/from | Aspect | Notes | Status |
|---|---|---|---|---|---|---|---|---|
| edit table |
EcoliWiki Links
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See also
References
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