gfcD:Quickview: Difference between revisions
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://ecoliwiki.net/tools/display_dna.php?gene=gfcD&loc=MG1655:1047168..1045072,W3110:1048367..1046271,DH10B:1101096..1099000,REL606:1062940..1065036,BW2952:948040..950136 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=948040&end=950136&gene=gfcD&aa=mkknsyllsclaiavssachaevltypdplgssqsdfggtgllqmpnariapegefsvnyrdndqyrfystsvalfpwlegtirytdvrtrkysqwedfsgdqsykdksfdfklrlweegywlpqvafgkrdiagtglfdgeylvaskqagpfdftlgmawgyagnagnitnpfcrvsdkychraeshdagdisfsdifrgpasifggieyqtpwnplrlkleydgnnyqndfagklpqashfnvgavyraaswadlnlsyergntlmfgftlrtnfndlrpalrdtpkpayqpapeseglqyttvanqltalkynagfdapeiqlrdktlymsgqqykyrdsreavdranrilvnnlpqgvekisvtqkrehmamvttetdvaslrkqlagtapgqseplqqqrveaedlsafgrgyriredrfsysfnptlsqslggpedfymfqlglmssarywftdhllldggiftniynnydkfkssllpadstlprvrthirdyvrndvylnnlqanyfadlgngfygqvyggyletmyagvgsellyrpldacwalgvdvnyvkqrdwdnmmrftdystptgfvtaywnpptlngvlmklsvgqylakdkgatidvakrfdsgvavgvwaaisnvskddygeggfskgfyisipfdlmtigpnrnravvswtpltrdggqmlsrkyqlypmtaerevpvgq Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gfcD+AND+escherichia+coli Pubmed(gfcD)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=gfcD Textpresso(gfcD)] | [http://porteco.org/AjaxSearch.jsp?searchString=gfcD&s=search PortEco search(gfcD)] [http://ecoliwiki.net/tools/display_dna.php?gene=gfcD&loc=MG1655:1047168..1045072,W3110:1048367..1046271,DH10B:1101096..1099000,REL606:1062940..1065036,BW2952:948040..950136 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=948040&end=950136&gene=gfcD&aa=mkknsyllsclaiavssachaevltypdplgssqsdfggtgllqmpnariapegefsvnyrdndqyrfystsvalfpwlegtirytdvrtrkysqwedfsgdqsykdksfdfklrlweegywlpqvafgkrdiagtglfdgeylvaskqagpfdftlgmawgyagnagnitnpfcrvsdkychraeshdagdisfsdifrgpasifggieyqtpwnplrlkleydgnnyqndfagklpqashfnvgavyraaswadlnlsyergntlmfgftlrtnfndlrpalrdtpkpayqpapeseglqyttvanqltalkynagfdapeiqlrdktlymsgqqykyrdsreavdranrilvnnlpqgvekisvtqkrehmamvttetdvaslrkqlagtapgqseplqqqrveaedlsafgrgyriredrfsysfnptlsqslggpedfymfqlglmssarywftdhllldggiftniynnydkfkssllpadstlprvrthirdyvrndvylnnlqanyfadlgngfygqvyggyletmyagvgsellyrpldacwalgvdvnyvkqrdwdnmmrftdystptgfvtaywnpptlngvlmklsvgqylakdkgatidvakrfdsgvavgvwaaisnvskddygeggfskgfyisipfdlmtigpnrnravvswtpltrdggqmlsrkyqlypmtaerevpvgq Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gfcD+AND+escherichia+coli Pubmed(gfcD)] [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=gfcD Textpresso(gfcD)] | ||
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Revision as of 08:12, 27 May 2011
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
gfcD |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
conserved protein[3]; putative lipoprotein[2] Required for formation of the O-antigen capsule; silenced by IS1D insertion in promoter region[4] |
| Product Synonyms(s) | |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
PortEco search(gfcD) DNA display Protein display Pubmed(gfcD) Textpresso(gfcD) |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Function characterized in enteropathogenic E. coli (EPEC). gfcD and yjbH are paralogs. GfcD has both type I (21 aa) and (slightly better) type II (17 aa) signal peptide predictions by SignalP/LipoP. GfcD is not likely to be a lipoprotein because the lipobox Cys is poorly conserved. Part of the gfcABCDE-etp-etk operon.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.