GLAM2: Difference between revisions
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== Short Description == | == Short Description == | ||
{{UserContentHelp}} | {{UserContentHelp}} | ||
GLAM2 is a program in the MEME software | GLAM2 is a program in the [[MEME]] software suite, which can be used for finding composite or dyad motifs. GLAM2 can be used to find motif in either nucleotide or amino acid sequences, the user must tell GLAM2 which alphabet to use as it does not have either as a default. | ||
GLAM2 (Gapped Local Alignment of Motifs) is built off of [ | GLAM2 (Gapped Local Alignment of Motifs) is built off of [[GLAM]] (Gapless Local Alignment of Multiple sequences), but has clearly moved away from its parent's tree in that is is focused on finding gapped alignments. | ||
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Links to sites that run the software or where it can be obtained | Links to sites that run the software or where it can be obtained | ||
http://meme.nbcr.net/meme4_3_0/cgi-bin/glam2.cgi | *[http://meme.nbcr.net/meme4_3_0/glam2-intro.html Introduction] | ||
*[http://meme.nbcr.net/meme4_3_0/cgi-bin/glam2.cgi Online Submission] | |||
*[http://meme.nbcr.net/meme4_3_0/doc/glam2_tut.html Tutorial] | |||
*[http://meme.nbcr.net/meme4_3_0/doc/examples/glam2_example_output_files/glam2.html Example Output] | |||
*[http://meme.nbcr.net/meme4_3_0/doc/glam2_ref.html Command Line Arguments] | |||
*[http://meme.nbcr.net/meme4_3_0/intro.html MEME Suite Home Page] | |||
== Requirements == | == Requirements == | ||
Hardware/Software requirements, if applicable | Hardware/Software requirements, if applicable | ||
http://meme.nbcr.net/meme4_3_0/doc/meme-install.html#prerequisite | GLAM2 is downloaded with the entire MEME Suite and shares [http://meme.nbcr.net/meme4_3_0/doc/meme-install.html#prerequisite requirements]. | ||
== User notes == | == User notes == | ||
Latest revision as of 18:56, 11 May 2010
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Short Description
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GLAM2 is a program in the MEME software suite, which can be used for finding composite or dyad motifs. GLAM2 can be used to find motif in either nucleotide or amino acid sequences, the user must tell GLAM2 which alphabet to use as it does not have either as a default.
GLAM2 (Gapped Local Alignment of Motifs) is built off of GLAM (Gapless Local Alignment of Multiple sequences), but has clearly moved away from its parent's tree in that is is focused on finding gapped alignments.
Links
Links to sites that run the software or where it can be obtained
Requirements
Hardware/Software requirements, if applicable
GLAM2 is downloaded with the entire MEME Suite and shares requirements.
User notes
See Also
References
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