ispA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ispA''  
''ispA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0415, b0421, JW0411''<ref name='LIB:Riley_2006'/>
''ECK0415, b0421, JW0411''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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Farnesyl diphosphate synthase, isoprenoid biosynthesis<ref name='LIB:EcoGene'/>
Farnesyl diphosphate synthase, isoprenoid biosynthesis<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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geranyltranstransferase<ref name='LIB:Riley_2006'/>, B0421<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IspA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
geranyltranstransferase<ref name='LIB:Riley_2006'/>, B0421<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IspA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0004161 dimethylallyltranstransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0004337 geranyltranstransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0033384 geranyl diphosphate biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0045337 farnesyl diphosphate biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:xseB-ispA-dxs-yajO|xseB-ispA-dxs-yajO]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:xseB-ispA-dxs-yajO|xseB-ispA-dxs-yajO]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ispA&loc=MG1655:440325..439426,W3110:440325..439426,DH10B:379656..378757,REL606:409523..408624 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=409523&end=408624&gene=ispA&aa=mdfpqqleacvkqanqalsrfiaplpfqntpvvetmqygallggkrlrpflvyatghmfgvstntldapaaavecihayslihddlpamddddlrrglptchvkfgeanailagdalqtlafsilsdadmpevsdrdrismiselasasgiagmcggqaldldaegkhvpldalerihrhktgaliraavrlgalsagdkgrralpvldkyaesiglafqvqddildvvgdtatlgkrqgadqqlgkstypallgleqarkkardliddarqslkqlaeqsldtsalealadyiiqrnk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ispA+AND+escherichia+coli Pubmed(ispA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ispA Textpresso(ispA)]


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Revision as of 00:29, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

ispA

Gene Synonym(s)

ECK0415, b0421, JW0411[1]

Product Desc.

Farnesyl diphosphate synthase, isoprenoid biosynthesis[2]

Product Synonyms(s)

geranyltranstransferase[1], B0421[3][1], IspA[3][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): xseB-ispA-dxs-yajO[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(ispA)    Textpresso(ispA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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