queC:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
update QV table |
||
| Line 27: | Line 27: | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''queC'' | ''queC'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ybaX, ECK0438, b0444, JW0434''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ybaX, ECK0438, b0444, JW0434''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
enzyme in preQ<sub>0</sub> biosynthesis <ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | enzyme in preQ<sub>0</sub> biosynthesis <ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
| Line 41: | Line 41: | ||
Required for 7-cyano-7-deazaguanine (preQ0) synthesis; queuosine biosynthesis, step 1<ref name='LIB:EcoGene'/> | Required for 7-cyano-7-deazaguanine (preQ0) synthesis; queuosine biosynthesis, step 1<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
predicted aluminum resistance protein<ref name='LIB:Riley_2006'/>, B0444<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, QueC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted aluminum resistance protein<ref name='LIB:Riley_2006'/>, B0444<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, QueC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | || | ||
'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
|| | |||
|- | |||
!align=left {{table_heading_style}} |Regulation/Expression | |||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:ybaX|ybaX]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ybaX|ybaX]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[http://ecoliwiki.net/tools/display_dna.php?gene=queC&loc=MG1655:464771..464076,W3110:464771..464076,DH10B:404102..403407,REL606:436919..437614 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=436919&end=437614&gene=queC&aa=mkravvvfsggqdsttclvqalqqydevhcvtfdygqrhraeidvarelalklgarahkvldvtllnelavssltrdsipvpdyepeadgipntfvpgrnilfltlaaiyayqvkaeavitgvcetdfsgypdcrdefvkalnhavslgmakdirfetplmwidkaetwaladyygkldlvrnetltcyngfkgdgcghcaacnlranglnhyladkptvmaamkqktglr Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=queC+AND+escherichia+coli Pubmed(queC)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=queC Textpresso(queC)] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Revision as of 00:22, 22 January 2010
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
queC |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
enzyme in preQ0 biosynthesis [2][3] Required for 7-cyano-7-deazaguanine (preQ0) synthesis; queuosine biosynthesis, step 1[4] |
| Product Synonyms(s) |
predicted aluminum resistance protein[1], B0444[2][1], YbaX[2][1], QueC[2][1] |
| Function from GO |
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Asn, Asp, Tyr, and His tRNA anticodons are modified. A. viscosus ortholog ALU1 confers aluminum tolerance when cloned in E. coli (Jo, 1997). COG0603 predicts ATPase activity. AFMB Structural Genomics target No. 25 (http://afmb.cnrs-mrs.fr/article171.html). tgt mutants lack queuosine and are have reduced survival in stationary phase. (Noguchi, 1982).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.