appY:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''appY'' | ''appY'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0556, b0564, JW0553''<ref name='LIB:Riley_2006'/> | ''ECK0556, b0564, JW0553''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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AppY transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | AppY transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Global transcription regulator, AraC family, DLP12 prophage<ref name='LIB:EcoGene'/> | Global transcription regulator, AraC family, DLP12 prophage<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DLP12 prophage; DNA-binding transcriptional activator<ref name='LIB:Riley_2006'/>, B0564<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AppY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, regulatory protein affecting appA and other genes<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | DLP12 prophage; DNA-binding transcriptional activator<ref name='LIB:Riley_2006'/>, B0564<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AppY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, regulatory protein affecting appA and other genes<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:appY|appY]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:appY|appY]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=appY&loc=MG1655:582904..583653,W3110:582904..583653,DH10B:522236..522985,DH10B:635496..636245,REL606:559033..559782 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=559033&end=559782&gene=appY&aa=mdyvcsvvficqsfdliinrrvisfkknslfivsdkirrelpvcpsklrivdidkktclsffidvnnelpgkftldkngyiaeeepplslvfslfegikiadshslwlkerlcisllamfkkresvnsfiltnintftckitgiisfnierqwhlkdiaeliytseslikkrlrdegtsfteilrdtrmryakklitsnsysinvvaqkcgynstsyficafkdyygvtpshyfekiigvtdginktid Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=appY+AND+escherichia+coli Pubmed(appY)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=appY Textpresso(appY)] | |||
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Revision as of 00:11, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
appY |
|---|---|
| Gene Synonym(s) |
ECK0556, b0564, JW0553[1] |
| Product Desc. |
AppY transcriptional activator[2][3] Global transcription regulator, AraC family, DLP12 prophage[4] |
| Product Synonyms(s) |
DLP12 prophage; DNA-binding transcriptional activator[1], B0564[2][1], AppY[2][1], regulatory protein affecting appA and other genes[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
appY expression is induced by PO4 starvation and stationary phase. AppY activates appABC as growth slows and either activates or repressses other genes during exponential or stationary phase.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.