araB:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''araB''  
''araB''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0064, b0063, JW0062''<ref name='LIB:Riley_2006'/>
''ECK0064, b0063, JW0062''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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L-ribulokinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
L-ribulokinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Ribulokinase<ref name='LIB:EcoGene'/>
Ribulokinase<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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L-ribulokinase<ref name='LIB:Riley_2006'/>, B0063<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AraB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ribulokinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ATP:L-ribulose 5-phosphotransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
L-ribulokinase<ref name='LIB:Riley_2006'/>, B0063<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AraB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ribulokinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ATP:L-ribulose 5-phosphotransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI,IDA])
* GO:0008741 ribulokinase activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IMP])
* GO:0016773 phosphotransferase activity, alcohol group as acceptor ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0019569 L-arabinose catabolic process to xylulose 5-phosphate ([http://www.geneontology.org/GO.evidence.shtml IEP,ISA])
* GO:0019568 arabinose catabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP,IDA])
* GO:0019572 L-arabinose catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016052 carbohydrate catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:araBAD|araBAD]]<ref name='LIB:EcoCyc10.6'/>, OP00302, ara  
transcription unit(s): [[:Category:Txn_unit:araBAD|araBAD]]<ref name='LIB:EcoCyc10.6'/>, OP00302, ara  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=araB&loc=MG1655:70048..68348,W3110:70048..68348,REL606:72852..71152 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=72852&end=71152&gene=araB&aa=maiaigldfgsdsvralavdcatgeeiatsvewyprwqkgqfcdapnnqfrhhprdyiesmeaalktvlaelsveqraavvgigvdstgstpapidadgnvlalrpefaenpnamfvlwkdhtaveeaeeitrlchapgnvdysryiggiyssewfwakilhvtrqdsavaqsaaswielcdwvpallsgttrpqdirrgrcsaghkslwheswgglppasffdeldpilnrhlpsplftdtwtadipvgtlcpewaqrlglpesvvisggafdchmgavgagaqpnalvkvigtstcdiliadkqsvgeravkgicgqvdgsvvpgfigleagqsafgdiyawfgrvlgwpleqlaaqhpelktqinasqkqllpalteawaknpsldhlpvvldwfngrrtpnanqrlkgvitdlnlatdapllfggliaatafgaraimecftdqgiavnnvmalggiarknqvimqaccdvlnrplqivasdqccalgaaifaavaakvhadipsaqqkmasavektlqpcseqaqrfeqlyrryqqwamsaeqhylptsapaqaaqavatl Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=araB+AND+escherichia+coli Pubmed(araB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=araB Textpresso(araB)]


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Revision as of 00:11, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

araB

Gene Synonym(s)

ECK0064, b0063, JW0062[1]

Product Desc.

L-ribulokinase[2][3];

Component of L-ribulokinase[2][3]

Ribulokinase[4]

Product Synonyms(s)

L-ribulokinase[1], B0063[2][1], AraB[2][1], ribulokinase[2][1], ATP:L-ribulose 5-phosphotransferase[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): araBAD[2], OP00302, ara

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(araB)    Textpresso(araB)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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