arcA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Update TableEdit tables.
update QV table
Line 27: Line 27:


|-
|-
!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
||
''arcA''  
''arcA''  
|-
|-
!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK4393, b4401, JW4364, dye, fexA, msp, seg, sfrA, cpxC''<ref name='LIB:Riley_2006'/>
''ECK4393, b4401, JW4364, dye, fexA, msp, seg, sfrA, cpxC''<ref name='LIB:Riley_2006'/>
|-
|-
!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
||
||
ArcA transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
ArcA transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Line 41: Line 41:
Response regulator, represses aerobic genes anaerobically; also activates some anaerobic genes; phosphorylated by ArcB<ref name='LIB:EcoGene'/>
Response regulator, represses aerobic genes anaerobically; also activates some anaerobic genes; phosphorylated by ArcB<ref name='LIB:EcoGene'/>
|-
|-
!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
B4401 product<ref name='LIB:EcoCyc10.6'/>, negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) product<ref name='LIB:EcoCyc10.6'/>, CpxC product<ref name='LIB:EcoCyc10.6'/>, Dye product<ref name='LIB:EcoCyc10.6'/>, FexA product<ref name='LIB:EcoCyc10.6'/>, Msp product<ref name='LIB:EcoCyc10.6'/>, Seg product<ref name='LIB:EcoCyc10.6'/>, SfrA product<ref name='LIB:EcoCyc10.6'/>, respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>, unphosphorylated respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>, unmodified respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>, ArcA control protein product<ref name='LIB:EcoCyc10.6'/>, dye resistance protein product<ref name='LIB:EcoCyc10.6'/>, aerobic respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>  
B4401 product<ref name='LIB:EcoCyc10.6'/>, negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) product<ref name='LIB:EcoCyc10.6'/>, CpxC product<ref name='LIB:EcoCyc10.6'/>, Dye product<ref name='LIB:EcoCyc10.6'/>, FexA product<ref name='LIB:EcoCyc10.6'/>, Msp product<ref name='LIB:EcoCyc10.6'/>, Seg product<ref name='LIB:EcoCyc10.6'/>, SfrA product<ref name='LIB:EcoCyc10.6'/>, respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>, unphosphorylated respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>, unmodified respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>, ArcA control protein product<ref name='LIB:EcoCyc10.6'/>, dye resistance protein product<ref name='LIB:EcoCyc10.6'/>, aerobic respiration control protein ArcA product<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
||
||
'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP])
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP])
'''Biological Process'''
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP])


|-
|-
!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
 
|-
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:arcA|arcA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:arcA|arcA]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
||


|-
!align=left {{table_heading_style}} |Quick Links
||
[http://ecoliwiki.net/tools/display_dna.php?gene=arcA&loc=MG1655:4638329..4637613,W3110:4644986..4644270,REL606:4628466..4627750,DH10B:4684791..4684075 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4684791&end=4684075&gene=arcA&aa=mqtphilivedelvtrntlksifeaegydvfeatdgaemhqilseydinlvimdinlpgknglllarelreqanvalmfltgrdnevdkilgleigaddyitkpfnpreltirarnllsrtmnlgtvseerrsvesykfngweldinsrsligpdgeqyklprseframlhfcenpgkiqsraellkkmtgrelkphdrtvdvtirrirkhfestpdtpeiiatihgegyrfcgdled Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=arcA+AND+escherichia+coli Pubmed(arcA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=arcA Textpresso(arcA)]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Revision as of 00:11, 22 January 2010

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

arcA

Gene Synonym(s)

ECK4393, b4401, JW4364, dye, fexA, msp, seg, sfrA, cpxC[1]

Product Desc.

ArcA transcriptional dual regulator[2][3] DNA-binding response regulator in two-component regulatory system with ArcB or CpxA product Response regulator, represses aerobic genes anaerobically; also activates some anaerobic genes; phosphorylated by ArcB[4]

Product Synonyms(s)

B4401 product[2], negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) product[2], CpxC product[2], Dye product[2], FexA product[2], Msp product[2], Seg product[2], SfrA product[2], respiration control protein ArcA product[2], unphosphorylated respiration control protein ArcA product[2], unmodified respiration control protein ArcA product[2], ArcA control protein product[2], dye resistance protein product[2], aerobic respiration control protein ArcA product[2]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): arcA[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(arcA)    Textpresso(arcA)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]





References

[back to top]


  1. ↑ Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 2.11 2.12 2.13 2.14 2.15 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=arcA:Quickview&oldid=1032432"