arnB:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''arnB'' | ''arnB'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''yfbE, ECK2246, b2253, JW5372, pmrH''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''yfbE, ECK2246, b2253, JW5372, pmrH''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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G7166<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | G7166<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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UDP-4-amino-4-deoxy-L-arabinose synthase; UDP-4"-ketopentose aminotransferase; L-glutamate is the amine donor<ref name='LIB:EcoGene'/> | UDP-4-amino-4-deoxy-L-arabinose synthase; UDP-4"-ketopentose aminotransferase; L-glutamate is the amine donor<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B2253<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfbE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ArnB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent<ref name='LIB:Riley_2006'/>, B2253<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfbE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ArnB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Cellular Component''' | |||
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml NAS]) | |||
'''Molecular Function''' | |||
* GO:0008483 transaminase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
* GO:0030170 pyridoxal phosphate binding ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yfbE|yfbE]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yfbE|yfbE]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=arnB&loc=MG1655:2363932..2365089,W3110:2370580..2371737,DH10B:2454938..2456077 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2454938&end=2456077&gene=arnB&aa=mdrysmaegkamseflpfsrpamgveelaavkevlesgwittgpknqaleqafcqltgnqhaiavssatagmhitlmalkigkgdevitpsltwvstlnmisllgatpvmvdvdrdtlmvtpeaiesaitprtkaiipvhyagapadidairaigerygiaviedaahavgtyykgrhigakgtaifsfhaiknitcaegglivtdnenlarqlrmlkfhglgvdaydrqtwgrapqaevltpgykynltdinaaialtqlvklehlntrrreiaqqyqqalaalpfqplslpawphvhawhlfiirvdeqrcgisrdalmealkergigtglhfraahtqkyyrerfptlslpntewnsericslplfpdmttadadhvitalqqlagq Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=arnB+AND+escherichia+coli Pubmed(arnB)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=arnB Textpresso(arnB)] | |||
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Revision as of 00:11, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
arnB |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
UDP-4-amino-4-deoxy-L-arabinose synthase; UDP-4"-ketopentose aminotransferase; L-glutamate is the amine donor[4] |
| Product Synonyms(s) |
uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent[1], B2253[2][1], YfbE[2][1], PmrH[2][1], ArnB[2][1] |
| Function from GO |
Cellular Component
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Involved in a lipid A modification required for polymyxin B and cationic antimicrobial peptide resistance. basRS regulon. AFMB Structural Genomics target No. 36 (http://afmb.cnrs-mrs.fr/article171.html). otherPDB (S. typhimurium): 1MDO, 1MDX, 1MDZ.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.