dacC:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''dacC''  
''dacC''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0829, b0839, JW0823, pbp''<ref name='LIB:Riley_2006'/>
''ECK0829, b0839, JW0823, pbp''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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penicillin-binding protein 6<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
penicillin-binding protein 6<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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D-alanine D-alanine carboxypeptidase PBP6; penicillin-binding protein 6<ref name='LIB:EcoGene'/>
D-alanine D-alanine carboxypeptidase PBP6; penicillin-binding protein 6<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)<ref name='LIB:Riley_2006'/>, B0839<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DacC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, D-alanyl-D-alanine carboxypeptidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)<ref name='LIB:Riley_2006'/>, B0839<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DacC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, D-alanyl-D-alanine carboxypeptidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0000270 peptidoglycan metabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0007047 cell wall organization ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008360 regulation of cell shape ([http://www.geneontology.org/GO.evidence.shtml IGI])
* GO:0009252 peptidoglycan biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0009273 peptidoglycan-based cell wall biogenesis ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0010382 cell wall metabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0042493 response to drug ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0004180 carboxypeptidase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008658 penicillin binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005887 integral to plasma membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:dacC|dacC]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:dacC|dacC]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=dacC&loc=MG1655:879950..881152,W3110:881149..882351,DH10B:933878..935080,REL606:873279..874481 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=873279&end=874481&gene=dacC&aa=mtqyssllrglaagsaflflfaptafaaeqtveapsvdarawilmdyasgkvlaegnadekldpasltkimtsyvvgqalkadkikltdmvtvgkdawatgnpalrgssvmflkpgdqvsvadlnkgviiqsgndacialadyvagsqesfiglmngyakklgltnttfqtvhgldapgqfstardmallgkalihdvpeeyaihkekeftfnkirqpnrnrllwssnlnvdgmktgttagagynlvasatqgdmrlisvvlgaktdrirfneseklltwgfrffetvtpikpdatfvtqrvwfgdksevnlgageagsvtiprgqlknlkasytltepqltaplkkgqvvgtidfqlngksieqrplivmenveeggffgrvwdfvmmkfhqwfgswfs Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dacC+AND+escherichia+coli Pubmed(dacC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dacC Textpresso(dacC)]


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Revision as of 00:04, 22 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

dacC

Gene Synonym(s)

ECK0829, b0839, JW0823, pbp[1]

Product Desc.

penicillin-binding protein 6[2][3]

D-alanine D-alanine carboxypeptidase PBP6; penicillin-binding protein 6[4]

Product Synonyms(s)

D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)[1], B0839[2][1], DacC[2][1], D-alanyl-D-alanine carboxypeptidase[2][1]

Function from GO

Biological Process

Molecular Function

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dacC[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(dacC)    Textpresso(dacC)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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