deoR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''deoR'' | ''deoR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0830, b0840, JW0824, nucR''<ref name='LIB:Riley_2006'/> | ''ECK0830, b0840, JW0824, nucR''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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DeoR transcriptional repressor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | DeoR transcriptional repressor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Repressor for deo operon, nupG and tsx; binds deoxyribose-5-phosphate inducer<ref name='LIB:EcoGene'/> | Repressor for deo operon, nupG and tsx; binds deoxyribose-5-phosphate inducer<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0840<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NucR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeoR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional repressor for deo operon, tsx, nupG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | DNA-binding transcriptional repressor<ref name='LIB:Riley_2006'/>, B0840<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NucR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeoR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional repressor for deo operon, tsx, nupG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:deoR|deoR]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:deoR|deoR]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=deoR&loc=MG1655:881957..881199,W3110:883156..882398,DH10B:935885..935127,REL606:875286..874528 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=875286&end=874528&gene=deoR&aa=metrreerigqllqelkrsdklhlkdaaallgvsemtirrdlnnhsapvvllggyivleprsashyllsdqksrlveekrraaklaatlvepdqtlffdcgtttpwiieaidneipftavcyslntflalkekphcraflcggefhasnaifkpidfqqtlnnfcpdiafysaagvhvskgatcfnleelpvkhwamsmaqkhvlvvdhskfgkvrparmgdlkrfdivvsdccpedeyvkyaqtqriklmy Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=deoR+AND+escherichia+coli Pubmed(deoR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=deoR Textpresso(deoR)] | |||
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Revision as of 00:04, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
deoR |
|---|---|
| Gene Synonym(s) |
ECK0830, b0840, JW0824, nucR[1] |
| Product Desc. |
DeoR transcriptional repressor[2][3] Repressor for deo operon, nupG and tsx; binds deoxyribose-5-phosphate inducer[4] |
| Product Synonyms(s) |
DNA-binding transcriptional repressor[1], B0840[2][1], NucR[2][1], DeoR[2][1], transcriptional repressor for deo operon, tsx, nupG[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The deoR gene is found immediately upstream of the operon. DeoR encodes a repressor protein that negatively regulates the expression of the operon at the level of transcription. A deoR-deficient mutant has a high level of deoxyriboaldolase and pyrimidine nucleoside phosphorylase. [5] In deoR mutations, the repressor is absent and the colonies of the mutants grow more rapidly (Munch-Peterson, et al, Eur. J. Biochem 27: 208-215 (1972)).
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ Zeng, X & Saxild, HH (1999) Identification and characterization of a DeoR-specific operator sequence essential for induction of dra-nupC-pdp operon expression in Bacillus subtilis. J. Bacteriol. 181 1719-27 PubMed