der:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''der'' | ''der'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2507, b2511, JW5403, engA, yfgK''<ref name='LIB:Riley_2006'/> | ''ECK2507, b2511, JW5403, engA, yfgK''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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50S ribosomal subunit stability factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | 50S ribosomal subunit stability factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Multicopy suppressor of ftsJ; depleted cells form filaments with defective chromosome segregation; GTPase<ref name='LIB:EcoGene'/> | Multicopy suppressor of ftsJ; depleted cells form filaments with defective chromosome segregation; GTPase<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted GTP-binding protein<ref name='LIB:Riley_2006'/>, B2511<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Der<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfgK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EngA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted GTP-binding protein<ref name='LIB:Riley_2006'/>, B2511<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Der<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfgK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EngA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:yfgL-der|yfgL-der]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:yfgL-der|yfgL-der]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=der&loc=MG1655:2635378..2633906,W3110:2636012..2634540,DH10B:2727143..2725671 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2727143&end=2725671&gene=der&aa=mrclmiyknealnmvpvvalvgrpnvgkstlfnrltrtrdalvadfpgltrdrkygraeiegreficidtggidgtedgvetrmaeqsllaieeadvvlfmvdaraglmpadeaiakhlrsrekptflvanktdgldpdqavvdfyslglgeiypiaashgrgvlsllehvllpwmedlapqeevdedaeywaqfeaeengeeeeeddfdpqslpiklaivgrpnvgkstltnrilgeervvvydmpgttrdsiyipmerdgreyvlidtagvrkrgkitdavekfsviktlqaiedanvvmlvidaregisdqdlsllgfilnsgrslvivvnkwdglsqevkeqvketldfrlgfidfarvhfisalhgsgvgnlfesvreaydsstrrvgtsmltrimtmavedhqpplvrgrrvklkyahaggynppivvihgnqvkdlpdsykrylmnyfrksldvmgspiriqfkegenpyankrntltptqmrkrkrlmkhikknk Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=der+AND+escherichia+coli Pubmed(der)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=der Textpresso(der)] | |||
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Revision as of 00:04, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
der |
|---|---|
| Gene Synonym(s) |
ECK2507, b2511, JW5403, engA, yfgK[1] |
| Product Desc. |
50S ribosomal subunit stability factor[2][3] Multicopy suppressor of ftsJ; depleted cells form filaments with defective chromosome segregation; GTPase[4] |
| Product Synonyms(s) |
predicted GTP-binding protein[1], B2511[2][1], Der[2][1], YfgK[2][1], EngA[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Der-depletion alters ribosome stability and/or biogenesis, as evidenced by polysome profiles (Bharat, 2006). Der has two tandem GTP-binding domains. der is an essential gene.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.