dksA:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''dksA'' | ''dksA'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0144, b0145, JW0141, msmA''<ref name='LIB:Riley_2006'/> | ''ECK0144, b0145, JW0141, msmA''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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RNAP-binding transcriptional regulator of rRNA transcription<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | RNAP-binding transcriptional regulator of rRNA transcription<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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RNAP-binding protein modulating ppGpp and iNTP regulation; reduces open complex half-life on rRNA promoters<ref name='LIB:EcoGene'/> | RNAP-binding protein modulating ppGpp and iNTP regulation; reduces open complex half-life on rRNA promoters<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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RNAP-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein<ref name='LIB:Riley_2006'/>, B0145<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DksA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | RNAP-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein<ref name='LIB:Riley_2006'/>, B0145<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DksA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Cellular Component''' | |||
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): | transcription unit(s): | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=dksA&loc=MG1655:160604..160149,W3110:160604..160149,DH10B:134708..134253,REL606:163455..163000 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=163455&end=163000&gene=dksA&aa=mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrlearptadlcidcktlaeirekqmag Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dksA+AND+escherichia+coli Pubmed(dksA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=dksA Textpresso(dksA)] | |||
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Revision as of 00:03, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
dksA |
|---|---|
| Gene Synonym(s) |
ECK0144, b0145, JW0141, msmA[1] |
| Product Desc. |
RNAP-binding transcriptional regulator of rRNA transcription[2][3] RNAP-binding protein modulating ppGpp and iNTP regulation; reduces open complex half-life on rRNA promoters[4] |
| Product Synonyms(s) |
RNAP-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein[1], B0145[2][1], MsmA[2][1], DksA[2][1] |
| Function from GO |
Cellular Component
|
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
High copy dksA suppresses mukB and TS growth and filamentation of a dnaK mutant. dksA is also a multicopy suppressor of dnaJ, grpE and prc. dksA transcription is alkali-inducible. Mutations affect chromosomal supercoiling. Binds TrxA (Kumar, 2004). HT_Cmplx24_Cyt: DksA+GreA. dksA and ybiI are paralogs.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.