hcaR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''hcaR'' | ''hcaR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2534, b2537, JW2521, yfhT, phdR''<ref name='LIB:Riley_2006'/> | ''ECK2534, b2537, JW2521, yfhT, phdR''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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HcaR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | HcaR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Transcriptional activator of the hca operon; inducd by 3-phenylpropionate and cinnamic acid; autoregulatory<ref name='LIB:EcoGene'/> | Transcriptional activator of the hca operon; inducd by 3-phenylpropionate and cinnamic acid; autoregulatory<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism<ref name='LIB:Riley_2006'/>, B2537<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism<ref name='LIB:Riley_2006'/>, B2537<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP]) | |||
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IEP,IDA,ISS]) | |||
* GO:0003677 DNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
'''Biological Process''' | |||
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:hcaR|hcaR]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:hcaR|hcaR]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=hcaR&loc=MG1655:2666918..2666028,W3110:2667552..2666662,REL606:2589595..2588705,DH10B:2758683..2757793 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2758683&end=2757793&gene=hcaR&aa=melrhlryfvavaqalnftraaeklhtsqpslssqirdlencvgvpllvrdkrkvaltaagecflqdalaileqaenaklrarkivqedrqltigfvpsaevnllpkvlpmfrlrqpdtlielvslittqqeekirrgeldvglmrhpvyspeidylelfdeplvvvlpvdhplahekeitaaqldgvnfvstdpvysgslapivkawfaqensqpnivqvatnilvtmnlvgmglgvtlipgymnnfntgqvvfrpiagnvpsiallmawkkgemkpalrdfiaivqerlasvta Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcaR+AND+escherichia+coli Pubmed(hcaR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hcaR Textpresso(hcaR)] | |||
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Revision as of 23:53, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
hcaR |
|---|---|
| Gene Synonym(s) |
ECK2534, b2537, JW2521, yfhT, phdR[1] |
| Product Desc. |
HcaR transcriptional dual regulator[2][3] Transcriptional activator of the hca operon; inducd by 3-phenylpropionate and cinnamic acid; autoregulatory[4] |
| Product Synonyms(s) |
DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism[1], B2537[2][1], PhdR[2][1], HcaR[2][1], YfhT[2][1] |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Hydrocinnamic acid is a synonym for 3-phenylpropionic acid. LysR family.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.