hcp:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''hcp'' | ''hcp'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0864, b0873, JW0857, ybjW, priS''<ref name='LIB:Riley_2006'/> | ''ECK0864, b0873, JW0857, ybjW, priS''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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hybrid-cluster protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | hybrid-cluster protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Hydroxylamine reductase, hybrid-cluster [2Fe-2S] protein <ref name='LIB:EcoGene'/> | Hydroxylamine reductase, hybrid-cluster [2Fe-2S] protein <ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases<ref name='LIB:Riley_2006'/>, Hcp<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0873<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbjW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PriS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, fuscoredoxin<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, prismane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases<ref name='LIB:Riley_2006'/>, Hcp<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0873<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbjW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PriS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, fuscoredoxin<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, prismane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:hcp-hcr|hcp-hcr]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:hcp-hcr|hcp-hcr]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=hcp&loc=MG1655:913037..911385,W3110:914236..912584,DH10B:966965..965313,REL606:930521..928869 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=930521&end=928869&gene=hcp&aa=mimfcvqceqtirtpagngcsyaqgmcgktaetsdlqdlliaalqglsawavkareygiinhdvdsfapraffstltnvnfdsprivgyareaialrealkaqclavdanarvdnpmadlqlvsddlgelqrqaaeftpnkdkaaigenilglrllclyglkgaaaymehahvlgqydndiyaqyhkimawlgtwpadmnallecsmeigqmnfkvmsildagetgkyghptptqvnvkatagkcilisghdlkdlynlleqtegtgvnvythgemlpahgypelrkfkhlvgnygsgwqnqqvefarfpgpivmtsnciidptvgayddriwtrsivgwpgvrhldgddfsavitqaqqmagfpyseiphlitvgfgrqtllgaadtlidlvsreklrhifllggcdgargerhyftdfatsvpddcliltlacgkyrfnklefgdieglprlvdagqcndaysaiilavtlaeklgcgvndlplslvlswfeqkaivilltllslgvknivtgptapgfltpdllavlnekfglrsittveedmkqllsa Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcp+AND+escherichia+coli Pubmed(hcp)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hcp Textpresso(hcp)] | |||
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Revision as of 23:53, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
hcp |
|---|---|
| Gene Synonym(s) |
ECK0864, b0873, JW0857, ybjW, priS[1] |
| Product Desc. |
Hydroxylamine reductase, hybrid-cluster [2Fe-2S] protein [4] |
| Product Synonyms(s) |
hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases[1], Hcp[2][1], B0873[2][1], YbjW[2][1], PriS[2][1], fuscoredoxin[2][1], prismane protein[2][1] |
| Function from GO |
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Hcp is in an operon and associated with the Hcr oxidoreductase. It is not known if Hcp is a physiologically relevant substrate but Hcp can degrade it in vivo. Hcp is also called fuscoredoxin or prismane protein. Hcp is expressed anaerobically with nitrate or nitrite as terminal electron acceptors and may be involved in metabolizing byproducts of nitrogen metabolism, which might include hydroxylamine. Alternatively is coudl be a catbolic enzyme for an exogeneous substrate, including hydroxylamine. Hcp is upregulated by GSNO in defined medium. FNR regulon.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.