hypE:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''hypE''  
''hypE''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2725, b2730, JW2700, hydB, hydE, hydF''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK2725, b2730, JW2700, hydB, hydE, hydF''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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hydrogenase maturation protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
hydrogenase maturation protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Hydrogenases 1,2,3 accessory protein; required for CN ligand synthesis at the metallocenter; converts thiocarbamate at its C-terminal Cys to a thiocyanate<ref name='LIB:EcoGene'/>
Hydrogenases 1,2,3 accessory protein; required for CN ligand synthesis at the metallocenter; converts thiocarbamate at its C-terminal Cys to a thiocyanate<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein<ref name='LIB:Riley_2006'/>, HydF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HypE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2730<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein<ref name='LIB:Riley_2006'/>, HydF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HypE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2730<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Biological Process'''
* GO:0046892 peptidyl-S-carbamoyl-L-cysteine dehydration ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0051604 protein maturation ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hypBCDE-fhlA|hypBCDE-fhlA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:hypABCDE-fhlA|hypABCDE-fhlA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:hypBCDE|hypBCDE]]<ref name='LIB:EcoCyc10.6'/>, hydBEF, [[:Category:Txn_unit:hypABCDE|hypABCDE]]<ref name='LIB:EcoCyc10.6'/>, OP00209  
transcription unit(s): [[:Category:Txn_unit:hypBCDE-fhlA|hypBCDE-fhlA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:hypABCDE-fhlA|hypABCDE-fhlA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:hypBCDE|hypBCDE]]<ref name='LIB:EcoCyc10.6'/>, hydBEF, [[:Category:Txn_unit:hypABCDE|hypABCDE]]<ref name='LIB:EcoCyc10.6'/>, OP00209  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=hypE&loc=MG1655:2851318..2852286,W3110:2851952..2852920,DH10B:2943860..2944828,REL606:2748156..2749124 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2748156&end=2749124&gene=hypE&aa=mqqlinslfmeafanpwlaeqedqarldlaqlvaegdrlafstdsyvidplffpggnigklaicgtandvavsgaiprylscgfileeglpmetlkavvtsmaetaraagiaivtgdtkvvqrgavdklfintagmgaipanihwgaqtltagdvllvsgtlgdhgatilnlreqlgldgelvsdcavltpliqtlrdipgvkalrdatrggvnavvhefaaacgcgielseaalpvkpavrgvcellgldalnfanegklviavernaaeqvlaalhshplgkdaaligevverkgvrlaglygvkrtldlphaeplpric Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hypE+AND+escherichia+coli Pubmed(hypE)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hypE Textpresso(hypE)]


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Revision as of 23:50, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

hypE

Gene Synonym(s)

ECK2725, b2730, JW2700, hydB, hydE, hydF[1][2]

Product Desc.

hydrogenase maturation protein[2][3]

Hydrogenases 1,2,3 accessory protein; required for CN ligand synthesis at the metallocenter; converts thiocarbamate at its C-terminal Cys to a thiocyanate[4]

Product Synonyms(s)

carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein[1], HydF[2][1], HypE[2][1], B2730[2][1], HydE[2][1], HydB[2][1]

Function from GO

Biological Process

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hypBCDE-fhlA[2], hypABCDE-fhlA[2], hypBCDE[2], hydBEF, hypABCDE[2], OP00209

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(hypE)    Textpresso(hypE)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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HypF adds the C-terminal thiocarbamate to HypE.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 2.10 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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