icd:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''icd'' | ''icd'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1122, b1136, JW1122, icdA, icdE, icdR''<ref name='LIB:Riley_2006'/> | ''ECK1122, b1136, JW1122, icdA, icdE, icdR''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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Icd<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | Icd<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
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Isocitrate dehydrogenase, NADP+-specific; e14 attachment site<ref name='LIB:EcoGene'/> | Isocitrate dehydrogenase, NADP+-specific; e14 attachment site<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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e14 prophage; isocitrate dehydrogenase, specific for NADP+<ref name='LIB:Riley_2006'/>, B1136<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Icd<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IcdE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IcdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | e14 prophage; isocitrate dehydrogenase, specific for NADP+<ref name='LIB:Riley_2006'/>, B1136<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Icd<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IcdE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IcdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:icd|icd]]<ref name='LIB:EcoCyc10.6'/>, OP00148 | transcription unit(s): [[:Category:Txn_unit:icd|icd]]<ref name='LIB:EcoCyc10.6'/>, OP00148 | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=icd&loc=MG1655:1194346..1195596,W3110:1196700..1197950,DH10B:1249791..1251041,REL606:1210492..1211742 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1210492&end=1211742&gene=icd&aa=meskvvvpaqgkkitlqngklnvpenpiipyiegdgigvdvtpamlkvvdaavekaykgerkiswmeiytgekstqvygqdvwlpaetldlireyrvaikgplttpvgggirslnvalrqeldlyiclrpvryyqgtpspvkhpeltdmvifrensediyagiewkadsadaekvikflreemgvkkirfpehcgigikpcseegtkrlvraaieyaiandrdsvtlvhkgnimkftegafkdwgyqlareefggelidggpwlkvknpntgkeivikdviadaflqqillrpaeydviacmnlngdyisdalaaqvggigiapganigdecalfeathgtapkyagqdkvnpgsiilsaemmlrhmgwteaadlivkgmegainaktvtydferlmdgakllkcsefgdaiienm Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=icd+AND+escherichia+coli Pubmed(icd)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=icd Textpresso(icd)] | |||
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Revision as of 23:50, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
icd |
|---|---|
| Gene Synonym(s) |
ECK1122, b1136, JW1122, icdA, icdE, icdR[1] |
| Product Desc. |
Component of isocitrate dehydrogenase[2][3] Isocitrate dehydrogenase, NADP+-specific; e14 attachment site[4] |
| Product Synonyms(s) |
e14 prophage; isocitrate dehydrogenase, specific for NADP+[1], B1136[2][1], Icd[2][1], IcdE[2][1], IcdA[2][1] |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
This icd allele has a C-terminus added during prophage e14 integration at codon 362, introducing 2 amino acid changes in icd. icdC encodes the original C-terminus of icd. Binds TrxA (Kumar, 2004).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.