kdgR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''kdgR'' | ''kdgR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1826, b1827, JW1816, yebP''<ref name='LIB:Riley_2006'/> | ''ECK1826, b1827, JW1816, yebP''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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KdgR transcriptional repressor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | KdgR transcriptional repressor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Regulator of kdgK, kdgT, eda; possibly regulates several other genes, e.g. yjgK<ref name='LIB:EcoGene'/> | Regulator of kdgK, kdgT, eda; possibly regulates several other genes, e.g. yjgK<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1827<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdgR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1827<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdgR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IDA,IMP]) | |||
'''Molecular Function''' | |||
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:kdgR|kdgR]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:kdgR|kdgR]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=kdgR&loc=MG1655:1908123..1907332,W3110:1911813..1911022,DH10B:1998694..1997903,REL606:1888676..1887885 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1888676&end=1887885&gene=kdgR&aa=manadldkqpdsvssvlkvfgilqalgeereigitelsqrvmmskstvyrflqtmktlgyvaqegesekysltlklfelgaralqnvdlirsadiqmrelsrltketihlgaldedsivyihkidsmynlrmysrigrrnplystaigkvllawrdrdevkqilegveykrstertitsteallpvldqvreqgygedneeqeeglrciavpvfdrfgvviaglsisfptlrfseerlqeyvamlhtaarkisaqmgyhdypf Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=kdgR+AND+escherichia+coli Pubmed(kdgR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=kdgR Textpresso(kdgR)] | |||
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Revision as of 23:48, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
kdgR |
|---|---|
| Gene Synonym(s) |
ECK1826, b1827, JW1816, yebP[1] |
| Product Desc. |
KdgR transcriptional repressor[2][3] Regulator of kdgK, kdgT, eda; possibly regulates several other genes, e.g. yjgK[4] |
| Product Synonyms(s) |
predicted DNA-binding transcriptional regulator[1], B1827[2][1], YebP[2][1], KdgR[2][1] |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
A kdgRyebQ clone conferred hypersensitivity to trimethoprim, but a yebQ-alone expression clone did not, leading the authors to conclude that overexpression of the transcriptional regulator YnfL was responsible for the Acr-S phenoptype.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.