rsmA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rsmA''  
''rsmA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0052, b0051, JW0050, rsmA''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, ksgA product
''ECK0052, b0051, JW0050, rsmA'', ksgA<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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16S rRNA dimethyladenosine transferase; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; mutant is kasugamycin resistant; multicopy suppressor of era(Cs)<ref name='LIB:EcoGene'/>
16S rRNA dimethyladenosine transferase; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; mutant is kasugamycin resistant; multicopy suppressor of era(Cs)<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase<ref name='LIB:Riley_2006'/>, B0051<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KsgA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase<ref name='LIB:Riley_2006'/>, B0051<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KsgA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0003690 double-stranded DNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0003729 mRNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0019843 rRNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0031167 rRNA methylation ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:pdxA-rsmA|pdxA-rsmA]]<ref name='LIB:EcoCyc10.6'/>, pdxA-rsmA, [[:Category:Txn_unit:pdxA-rsmA-apaGH|pdxA-rsmA-apaGH]]<ref name='LIB:EcoCyc10.6'/>, pdxA-rsmA-apaG-apaH, [[:Category:Txn_unit:rsmA-apaGH|rsmA-apaGH]]<ref name='LIB:EcoCyc10.6'/>, rsmA-apaG-apaH, rsmA-apaG-apaH, [[:Category:Txn_unit:surA-pdxA-rsmA-apaGH|surA-pdxA-rsmA-apaGH]]<ref name='LIB:EcoCyc10.6'/>, surA-pdxA-rsmA-apaGH  
transcription unit(s): [[:Category:Txn_unit:pdxA-rsmA|pdxA-rsmA]]<ref name='LIB:EcoCyc10.6'/>, pdxA-rsmA, [[:Category:Txn_unit:pdxA-rsmA-apaGH|pdxA-rsmA-apaGH]]<ref name='LIB:EcoCyc10.6'/>, pdxA-rsmA-apaG-apaH, [[:Category:Txn_unit:rsmA-apaGH|rsmA-apaGH]]<ref name='LIB:EcoCyc10.6'/>, rsmA-apaG-apaH, rsmA-apaG-apaH, [[:Category:Txn_unit:surA-pdxA-rsmA-apaGH|surA-pdxA-rsmA-apaGH]]<ref name='LIB:EcoCyc10.6'/>, surA-pdxA-rsmA-apaGH  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ksgA&loc=MG1655:52430..51609,W3110:52430..51609,DH10B:52430..51609,REL606:55804..56625 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=55804&end=56625&gene=ksgA&aa=mnnrvhqghlarkrfgqnflndqfvidsivsainpqkgqamveigpglaaltepvgerldqltvieldrdlaarlqthpflgpkltiyqqdamtfnfgelaekmgqplrvfgnlpynistplmfhlfsytdaiadmhfmlqkevvnrlvagpnskaygrlsvmaqyycnvipvlevppsaftpppkvdsavvrlvphatmphpvkdvrvlsritteafnqrrktirnslgnlfsvevltgmgidpamraenisvaqycqmanylaenaplqes Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ksgA+AND+escherichia+coli Pubmed(ksgA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ksgA Textpresso(ksgA)]


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Revision as of 23:47, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

rsmA

Gene Synonym(s)

ECK0052, b0051, JW0050, rsmA, ksgA[1][2]

Product Desc.

S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase[3][2]

16S rRNA dimethyladenosine transferase; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; mutant is kasugamycin resistant; multicopy suppressor of era(Cs)[4]

Product Synonyms(s)

S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase[1], B0051[3][1], KsgA[3][1], RsmA[3][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pdxA-rsmA[3], pdxA-rsmA, pdxA-rsmA-apaGH[3], pdxA-rsmA-apaG-apaH, rsmA-apaGH[3], rsmA-apaG-apaH, rsmA-apaG-apaH, surA-pdxA-rsmA-apaGH[3], surA-pdxA-rsmA-apaGH

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(ksgA)    Textpresso(ksgA)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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KsgA dimethylates two adjacent 16S rRNA adenosines. ksgA deletion mutants grow more slowly than an isogenic wt at 20C (Connolly, 2008).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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