lptB:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''lptB'' | ''lptB'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''yhbG, ECK3190, b3201, JW3168''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''yhbG, ECK3190, b3201, JW3168''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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LptB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | LptB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
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Lipopolysaccharide export ABC transporter ATP-binding protein; LptBFG<ref name='LIB:EcoGene'/> | Lipopolysaccharide export ABC transporter ATP-binding protein; LptBFG<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted transporter subunit: ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3201<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted transporter subunit: ATP-binding component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3201<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0015921 lipopolysaccharide export ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
'''Molecular Function''' | |||
* GO:0017089 glycolipid transporter activity ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:lptA-lptB|lptA-lptB]]<ref name='LIB:EcoCyc11.1'/> | transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:lptA-lptB|lptA-lptB]]<ref name='LIB:EcoCyc11.1'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=lptB&loc=MG1655:3341966..3342691,W3110:3343799..3344524,REL606:3279179..3279904 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3279179&end=3279904&gene=lptB&aa=matltaknlakaykgrrvvedvsltvnsgeivgllgpngagktttfymvvgivprdagniiiddddisllplhararrgigylpqeasifrrlsvydnlmavlqirddlsaeqredranelmeefhiehlrdsmgqslsggerrrveiaralaanpkfilldepfagvdpisvidikriiehlrdsglgvlitdhnvretlavcerayivsqghliahgtpteilqdehvkrvylgedfrl Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lptB+AND+escherichia+coli Pubmed(lptB)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=lptB Textpresso(lptB)] | |||
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Revision as of 23:46, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
lptB |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
Component of YhbG/YhbN ABC transporter[2]; LptA/LptB ABC transporter[3] Lipopolysaccharide export ABC transporter ATP-binding protein; LptBFG[4] |
| Product Synonyms(s) |
predicted transporter subunit: ATP-binding component of ABC superfamily[1], B3201[2][1], YhbG[2][1] |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): lptB-rpoN-yhbH-ptsN-yhbJ[2], yhbG-rpoN-yhbH-ptsN-yhbJ, lptA-lptB[3] |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
LptB depletion results in rifampicin/bile salts sensitivity, indicative of an outer membrane integrity defect. Reported to be essential based on depletion of ara-controlled expression (Sperandeo, 2006), however Baba, 2006, constructed a viable deletion strain. Binds TrxA (Kumar, 2004). RpoE regulon.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.