lrhA:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''lrhA'' | ''lrhA'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2283, b2289, JW2284, genR''<ref name='LIB:Riley_2006'/> | ''ECK2283, b2289, JW2284, genR''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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LrhA transcriptional repressor<ref name='LIB:EcoCyc10.6'/>; LrhA transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/> | LrhA transcriptional repressor<ref name='LIB:EcoCyc10.6'/>; LrhA transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/> | ||
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Transcriptional repressor of flagellar and motility master regulator FlhDC; autoregulator; mutation confers lower RpoS levels, modulates rssB activity<ref name='LIB:EcoGene'/> | Transcriptional repressor of flagellar and motility master regulator FlhDC; autoregulator; mutation confers lower RpoS levels, modulates rssB activity<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes<ref name='LIB:Riley_2006'/>, B2289<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GenR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LrhA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes<ref name='LIB:Riley_2006'/>, B2289<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GenR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LrhA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IDA,ISS,IEP]) | |||
'''Molecular Function''' | |||
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IDA,ISS,IEP]) | |||
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IDA,ISS,IEP]) | |||
* GO:0043565 sequence-specific DNA binding ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:lrhA|lrhA]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:lrhA|lrhA]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=lrhA&loc=MG1655:2404663..2403725,W3110:2411311..2410373,REL606:2350232..2349294,DH10B:2496428..2495490 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2496428&end=2495490&gene=lrhA&aa=misanrpiinldldllrtfvavadlntfaaaaaavcrtqsavsqqmqrleqlvgkelfarhgrnklltehgiqllgyarkilrfndeacsslmfsnlqgvltigasdesadtilpfllnrvssvypklaldvrvkrnaymaemlesqevdlmvtthrpsafkalnlrtspthwycaaeyilqkgepiplvllddpspfrdmvlatlnkadipwrlayvastlpavraavkaglgvtarpvemmspdlrvlsgvdglpplpdteyllcydpssnnelaqviyqamesyhnpwqyspmsapegddsllierdie Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=lrhA+AND+escherichia+coli Pubmed(lrhA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=lrhA Textpresso(lrhA)] | |||
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Revision as of 23:46, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
lrhA |
|---|---|
| Gene Synonym(s) |
ECK2283, b2289, JW2284, genR[1] |
| Product Desc. |
LrhA transcriptional repressor[2]; LrhA transcriptional dual regulator[3] Transcriptional repressor of flagellar and motility master regulator FlhDC; autoregulator; mutation confers lower RpoS levels, modulates rssB activity[4] |
| Product Synonyms(s) |
DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes[1], B2289[2][1], GenR[2][1], LrhA[2][1] |
| Function from GO |
Biological Process
Molecular Function
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
LysR family. LhrA is upstream of the nuo operon, but is not part of the nuo operon and does not regulate the nuo operon.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.