nanE:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''nanE''  
''nanE''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3212, b3223, JW3192, yhcJ''<ref name='LIB:Riley_2006'/>
''ECK3212, b3223, JW3192, yhcJ''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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NANE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
NANE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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ManNAc-6-P to GlcNAc-6-P epimerase<ref name='LIB:EcoGene'/>
ManNAc-6-P to GlcNAc-6-P epimerase<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted N-acetylmannosamine-6-P epimerase<ref name='LIB:Riley_2006'/>, B3223<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhcJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NanE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted N-acetylmannosamine-6-P epimerase<ref name='LIB:Riley_2006'/>, B3223<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhcJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NanE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0047465 N-acylglucosamine-6-phosphate 2-epimerase activity ([http://www.geneontology.org/GO.evidence.shtml NAS])
'''Biological Process'''
* GO:0006053 N-acetylmannosamine catabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:nanATEK-yhcH|nanATEK-yhcH]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:nanATEK-yhcH|nanATEK-yhcH]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=nanE&loc=MG1655:3369058..3368369,W3110:3370891..3370202,REL606:3298934..3298245,DH10B:3466803..3466114 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3466803&end=3466114&gene=nanE&aa=msllaqldqkiaangglivscqpvpdspldkpeivaamalaaeqagavairiegvanlqatravvsvpiigivkrdledspvritayiedvdalaqagadiiaidgtdrprpvpvetllarihhhgllamtdcstpedglacqklgaeiigttlsgyttpetpeepdlalvktlsdagcrviaegryntpaqaadamrhgawavtvgsaitrlehicqwyntamkkavl Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nanE+AND+escherichia+coli Pubmed(nanE)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=nanE Textpresso(nanE)]


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Revision as of 23:40, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

nanE

Gene Synonym(s)

ECK3212, b3223, JW3192, yhcJ[1]

Product Desc.

NANE[2][3]

ManNAc-6-P to GlcNAc-6-P epimerase[4]

Product Synonyms(s)

predicted N-acetylmannosamine-6-P epimerase[1], B3223[2][1], YhcJ[2][1], NanE[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nanATEK-yhcH[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(nanE)    Textpresso(nanE)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


NanE is not predicted to be a lipoprotein by LipOP or PATOSEQ, but is listed in DOLOP as a putative lipoprotein. Although the Cys is conserved, none of the homologs are predicted by LipoP to be a lipoprotein, so it is likely not to be a lipoprotein. NanE was just below the PATOSEQ cutoff for a lipoprotein prediction.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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