sdhA:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''sdhA''  
''sdhA''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0712, b0723, JW0713, dhsA''<ref name='LIB:Riley_2006'/>
''ECK0712, b0723, JW0713, dhsA''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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succinate dehydrogenase flavoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
succinate dehydrogenase flavoprotein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Succinate dehydrogenase (SQR) flavoprotein subunit; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration<ref name='LIB:EcoGene'/>
Succinate dehydrogenase (SQR) flavoprotein subunit; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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succinate dehydrogenase, flavoprotein subunit<ref name='LIB:Riley_2006'/>, B0723<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DhsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SdhA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
succinate dehydrogenase, flavoprotein subunit<ref name='LIB:Riley_2006'/>, B0723<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DhsA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SdhA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0009055 electron carrier activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IGI])
* GO:0000104 succinate dehydrogenase activity ([http://www.geneontology.org/GO.evidence.shtml IGI])
'''Biological Process'''
* GO:0009060 aerobic respiration ([http://www.geneontology.org/GO.evidence.shtml IEP,IGI])
* GO:0055114 oxidation reduction ([http://www.geneontology.org/GO.evidence.shtml IGI])
* GO:0006099 tricarboxylic acid cycle ([http://www.geneontology.org/GO.evidence.shtml IGI])
'''Cellular Component'''
* GO:0045282 plasma membrane succinate dehydrogenase complex ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005886 plasma membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:sdhDAB|sdhDAB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB  
transcription unit(s): [[:Category:Txn_unit:sdhDAB|sdhDAB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=sdhA&loc=MG1655:755130..756896,W3110:756329..758095,DH10B:807722..809488,REL606:736698..738464 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=736698&end=738464&gene=sdhA&aa=mklpvrefdavvigaggagmraalqisqsgqtcallskvfptrshtvsaqggitvalgnthednwewhmydtvkgsdyigdqdaieymcktgpeailelehmglpfsrlddgriyqrpfggqsknfggeqaartaaaadrtghallhtlyqqnlknhttifsewyaldlvknqdgavvgctalcietgevvyfkaratvlatggagriyqsttnahintgdgvgmairagvpvqdmemwqfhptgiagagvlvtegcrgeggyllnkhgerfmeryapnakdlagrdvvarsimieiregrgcdgpwgphaklkldhlgkevlesrlpgilelsrtfahvdpvkepipviptchymmggiptkvtgqaltvnekgedvvvpglfavgeiacvsvhganrlggnslldlvvfgraaglhlqesiaeqgalrdasesdveasldrlnrwnnnrngedpvairkalqecmqhnfsvfregdamakgleqlkvirerlknarlddtssefntqrvecleldnlmetayatavsanfrtesrgahsrfdfpdrddenwlchslylpesesmtrrsvnmepklrpafppkirty Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sdhA+AND+escherichia+coli Pubmed(sdhA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=sdhA Textpresso(sdhA)]


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Revision as of 23:32, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

sdhA

Gene Synonym(s)

ECK0712, b0723, JW0713, dhsA[1]

Product Desc.

succinate dehydrogenase flavoprotein[2][3];

Component of catalytic subcomplex of succinate dehydrogenase[3]; succinate dehydrogenase[3]

Succinate dehydrogenase (SQR) flavoprotein subunit; succinate:ubiquinone oxidoreductase (SQR); complex II of aerobic respiration[4]

Product Synonyms(s)

succinate dehydrogenase, flavoprotein subunit[1], B0723[2][1], DhsA[2][1], SdhA[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): sdhDAB[2], sdhCDAB-sucABCD[2], OP00142, sdhCDAB

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(sdhA)    Textpresso(sdhA)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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The sdhABCD operon is negatively regulated by ryhB RNA as part of indirect positive regulation by Fur. Binds TrxA (Kumar, 2004).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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