secY:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''secY''  
''secY''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3287, b3300, JW3262, prlA''<ref name='LIB:Riley_2006'/>
''ECK3287, b3300, JW3262, prlA''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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SecY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
SecY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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SecYE core translocon, protein export inner membrane pore protein<ref name='LIB:EcoGene'/>
SecYE core translocon, protein export inner membrane pore protein<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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preprotein translocase membrane subunit<ref name='LIB:Riley_2006'/>, B3300<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SecY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PrlA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
preprotein translocase membrane subunit<ref name='LIB:Riley_2006'/>, B3300<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SecY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PrlA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI,IGI])
'''Biological Process'''
* GO:0043952 protein transport by the Sec complex ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0065002 intracellular protein transmembrane transport ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0006886 intracellular protein transport ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Cellular Component'''
* GO:0016021 integral to membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0005886 plasma membrane ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ|rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ]]<ref name='LIB:EcoCyc10.6'/>, rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-prlA-rpmJ  
transcription unit(s): [[:Category:Txn_unit:rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ|rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ]]<ref name='LIB:EcoCyc10.6'/>, rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-prlA-rpmJ  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=secY&loc=MG1655:3442119..3440788,W3110:4196319..4197650,DH10B:3539864..3538533,REL606:3370671..3372002 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3370671&end=3372002&gene=secY&aa=makqpgldfqsakgglgelkrrllfvigalivfrigsfipipgidaavlaklleqqrgtiiemfnmfsggalsrasifalgimpyisasiiiqlltvvhptlaeikkegesgrrkisqytrygtlvlaifqsigiatglpnmpgmqglvinpgfafyftavvslvtgtmflmwlgeqitergigngisiiifagivaglppaiahtieqarqgdlhflvlllvavlvfavtffvvfvergqrrivvnyakrqqgrrvyaaqsthlplkvnmagvipaifassiilfpatiaswfgggtgwnwlttislylqpgqplyvllyasaiiffcffytalvfnpretadnlkksgafvpgirpgeqtakyidkvmtrltlvgalyitficlipefmrdamkvpfyfggtsllivvvvimdfmaqvqtlmmssqyesalkkanlkgygr Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=secY+AND+escherichia+coli Pubmed(secY)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=secY Textpresso(secY)]


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Revision as of 23:32, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

secY

Gene Synonym(s)

ECK3287, b3300, JW3262, prlA[1]

Product Desc.

SecY[2][3];

Component of SecEGY-Secretion Complex[2][3]; Sec Protein Secretion Complex[2][3]

SecYE core translocon, protein export inner membrane pore protein[4]

Product Synonyms(s)

preprotein translocase membrane subunit[1], B3300[2][1], SecY[2][1], PrlA[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-secY-rpmJ[2], rplNXE-rpsNH-rplFR-rpsE-rpmD-rplO-prlA-rpmJ

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(secY)    Textpresso(secY)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


SecYEG complex interacts with SecDFyajC to form a hexameric holocomplex. N-terminus is blocked. Overexpression causes a decrease in the amount of biofilm formed and decreases motility.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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