serB:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''serB''  
''serB''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4380, b4388, JW4351''<ref name='LIB:Riley_2006'/>
''ECK4380, b4388, JW4351''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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PSERPHOSPHA-
PSERPHOSPHA-
Phosphoserine phosphatase; HAD9<ref name='LIB:EcoGene'/>
Phosphoserine phosphatase; HAD9<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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3-phosphoserine phosphatase<ref name='LIB:Riley_2006'/>, B4388<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SerB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
3-phosphoserine phosphatase<ref name='LIB:Riley_2006'/>, B4388<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SerB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])
* GO:0004647 phosphoserine phosphatase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0016791 phosphatase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0000287 magnesium ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006564 L-serine biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP,IDA])
* GO:0008652 amino acid biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:serB|serB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:serB-radA|serB-radA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:serB|serB]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:serB-radA|serB-radA]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=serB&loc=MG1655:4622918..4623886,W3110:4629575..4630543,REL606:4613109..4614077,DH10B:4669380..4670348 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4669380&end=4670348&gene=serB&aa=mpnitwcdlpedvslwpglplslsgdevmpldyhagrsgwllygrgldkqrltqyqsklgaamvivaawcvedyqvirlagsltaratrlaheaqldvaplgkiphlrtpgllvmdmdstaiqiecideiaklagtgemvaevteramrgeldftaslrsrvatlkgadanilqqvrenlplmpgltqlvlkletlgwkvaiasggftffaeylrdklrltavvaneleimdgkftgnvigdivdaqykaktltrlaqeyeiplaqtvaigdgandlpmikaaglgiayhakpkvnekaevtirhadlmgvfcilsgslnqk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=serB+AND+escherichia+coli Pubmed(serB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=serB Textpresso(serB)]


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Revision as of 23:32, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

serB

Gene Synonym(s)

ECK4380, b4388, JW4351[1]

Product Desc.

PSERPHOSPHA- Phosphoserine phosphatase; HAD9[2]

Product Synonyms(s)

3-phosphoserine phosphatase[1], B4388[3][1], SerB[3][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): serB[3], serB-radA[3]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(serB)    Textpresso(serB)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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HAD superfamily.[2]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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