waaA:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''waaA'' | ''waaA'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''kdtA, ECK3623, b3633, JW3608''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/> | ''kdtA, ECK3623, b3633, JW3608''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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3-deoxy-D-manno-octulosonate(Kdo)-lipid A transferase<ref name='LIB:EcoGene'/> | 3-deoxy-D-manno-octulosonate(Kdo)-lipid A transferase<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)<ref name='LIB:Riley_2006'/>, B3633<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, WaaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdtA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)<ref name='LIB:Riley_2006'/>, B3633<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, WaaA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, KdtA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Biological Process''' | |||
* GO:0009245 lipid A biosynthetic process ([http://www.geneontology.org/GO.evidence.shtml IMP]) | |||
'''Molecular Function''' | |||
* GO:0016740 transferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
'''Cellular Component''' | |||
* GO:0016020 membrane ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | |||
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lethal (see PMID:7499229) | lethal (see PMID:7499229) | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Expression | ||
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transcription unit(s): [[:Category:Txn_unit:kdtA|kdtA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:kdtA-coaD|kdtA-coaD]]<ref name='LIB:EcoCyc10.6'/>, kdtAB, waaA-coaD | transcription unit(s): [[:Category:Txn_unit:kdtA|kdtA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:kdtA-coaD|kdtA-coaD]]<ref name='LIB:EcoCyc10.6'/>, kdtAB, waaA-coaD | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=waaA&loc=MG1655:3806563..3807840,W3110:3831875..3830598,REL606:3746895..3748172 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3746895&end=3748172&gene=waaA&aa=mlellytallyliqpliwirlwvrgrkapayrkrwgerygfyrhplkpggimlhsvsvgetlaaiplvralrhrypdlpitvttmtptgservqsafgkdvqhvylpydlpdalnrflnkvdpklvlimetelwpnliaalhkrkiplvianarlsarsaagyaklgkfvrrllrritliaaqneedgarfvalgaknnqvtvtgslkfdisvtpqlaakavtlrrqwaphrpvwiatsthegeesvviaahqallqqfpnlllilvprhperfpdainlvrqaglsyitrssgevpststqvvvgdtmgelmllygiadlafvggslvergghnpleaaahaipvlmgphtfnfkdicarleqasglitvtdattlakevsslltdadyrsfygrhavevlyqnqgalqrllqllepylppkth Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=waaA+AND+escherichia+coli Pubmed(waaA)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=waaA Textpresso(waaA)] | |||
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Revision as of 23:24, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
waaA |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
3-deoxy-D-manno-octulosonate(Kdo)-lipid A transferase[3] |
| Product Synonyms(s) |
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)[1], B3633[4][1], WaaA[4][1], KdtA[4][1] |
| Function from GO |
Biological Process
Molecular Function
Cellular Component
|
| Knock-Out Phenotype |
lethal (see PMID:7499229[5]) |
| Regulation/Expression |
transcription unit(s): kdtA[4], kdtA-coaD[4], kdtAB, waaA-coaD |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
WaaA adds 2 Kdo residues to lipid IVA. waaA is an essential gene. Mutagenesis eliminated ATG a codon 52 as a start codon (Belunis and Raetz, 1992).[3]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 4.0 4.1 4.2 4.3 4.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ Belunis, CJ et al. (1995) Inhibition of lipopolysaccharide biosynthesis and cell growth following inactivation of the kdtA gene in Escherichia coli. J. Biol. Chem. 270 27646-52 PubMed