yhjK:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''yhjK''  
''yhjK''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3514, b3529, JW5943''<ref name='LIB:Riley_2006'/>
''ECK3514, b3529, JW5943''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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predicted zinc-dependent peptidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted zinc-dependent peptidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Putative c-di-GMP dual activity enzyme, function unknown; expressed protein<ref name='LIB:EcoGene'/>
Putative c-di-GMP dual activity enzyme, function unknown; expressed protein<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B3529<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhjK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B3529<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhjK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yhjK|yhjK]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yhjK|yhjK]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=yhjK&loc=MG1655:3683602..3681653,W3110:3954836..3956785,DH10B:3781347..3779398,REL606:3615071..3613122 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3615071&end=3613122&gene=yhjK&aa=mamvaavvlvfvfifctvllfhlvqqnryntatqlesiarsvreplssailkgdipeaeailasikpagvvsradvvlpnqfqalrksfiperpvpvmvtrlfelpvqislgvyslerpanpqpiaylvlqadsfrmykfvmstlstlvtiylllsliltvaiswcinrlilhplrniarelnaipakelvghqlalprlhqddeigmlvrsynlnqqllqrhyeeqnenamrfpvsdlpnkallmemleqvvarkqttalmiitcetlrdtagvlkeaqreillltlveklksvlsprmilaqisgydfaviangvqepwhaitlgqqvltimserlpieriqlrphcsigvamfygdltaeqlysraisaaftarhkgknqiqffdpqqmeaaqkrlteesdilnalenhqfaiwlqpqvemtsgklvsaevllriqqpdgswdlpdglidrieccglmvtvghwvleescrllaawqergimlplsvnlsalqlmhpnmvadmlelltryriqpgtlilevtesrriddphaavailrplrnagvrvalddfgmgyaglrqlqhmkslpidvlkidkmfveglpgdssmiaaiimlaqslnlqmiaegveteaqrdwlakagvgiaqgflfarplpieifeesyleek Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yhjK+AND+escherichia+coli Pubmed(yhjK)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=yhjK Textpresso(yhjK)]


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Revision as of 22:59, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

yhjK

Gene Synonym(s)

ECK3514, b3529, JW5943[1]

Product Desc.

predicted zinc-dependent peptidase[2][3]

Putative c-di-GMP dual activity enzyme, function unknown; expressed protein[4]

Product Synonyms(s)

predicted diguanylate cyclase[1], B3529[2][1], YhjK[2][1]

Function from GO

Molecular Function

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yhjK[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(yhjK)    Textpresso(yhjK)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


YhjK has a central GGDEF putative diguanylate cyclase, then a C-terminal putative cyclic-di-GMP phosphodiesterase EAL domain. AFMB Structural Genomics target No. 78 (http://afmb.cnrs-mrs.fr/article171.html).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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