aaeR:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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'''Biological Process'''
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml RCA,IMP])
* GO:0006355 regulation of transcription, DNA-dependent ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Molecular Function'''
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml RCA,IMP])


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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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<p><a href="http://ecoliwiki.net/tools/display_dna.php?gene=aaeR&amp;loc=MG1655:3387542..3388471,W3110:3389375..3390304,DH10B:3485287..3486216,REL606:3317417..3318346" class="external text" title="http://ecoliwiki.net/tools/display_dna.php?gene=aaeR&amp;loc=MG1655:3387542..3388471,W3110:3389375..3390304,DH10B:3485287..3486216,REL606:3317417..3318346" rel="nofollow">DNA display</a>&nbsp;&nbsp;&nbsp; <a href="http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&amp;start=3317417&amp;end=3318346&amp;gene=aaeR&amp;aa=merlkrmsvfakvvefgsftaaarqlqmsvssisqtvskledelqvkllnrstrsiglteagriyyqgcrrmlhevqdvheqlyafnntpigtlrigcsstmaqnvlagltakmlkeypglsvnlvtgipapdliadgldvvirvgalqdsslfsrrlgampmvvcaaksyltqygipekpadlsshswleysvrpdnefeliapegistrlipqgrfvtndpmtlvrwltagagiayvplmwvineinrgeleillpryqsdprpvyalytekdklplkvqvvinsltdyfvevgklfqemhgrgkek" class="external text" title="http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&amp;start=3317417&amp;end=3318346&amp;gene=aaeR&amp;aa=merlkrmsvfakvvefgsftaaarqlqmsvssisqtvskledelqvkllnrstrsiglteagriyyqgcrrmlhevqdvheqlyafnntpigtlrigcsstmaqnvlagltakmlkeypglsvnlvtgipapdliadgldvvirvgalqdsslfsrrlgampmvvcaaksyltqygipekpadlsshswleysvrpdnefeliapegistrlipqgrfvtndpmtlvrwltagagiayvplmwvineinrgeleillpryqsdprpvyalytekdklplkvqvvinsltdyfvevgklfqemhgrgkek" rel="nofollow">Protein display</a>&nbsp;&nbsp;&nbsp; <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&amp;cmd=Search&amp;Term=aaeR+AND+escherichia+coli" class="external text" title="http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&amp;cmd=Search&amp;Term=aaeR+AND+escherichia+coli" rel="nofollow">Pubmed(aaeR)</a>&nbsp;&nbsp;&nbsp; <a href="http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=aaeR" class="external text" title="http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=aaeR" rel="nofollow">Textpresso(aaeR)</a>
[http://ecoliwiki.net/tools/display_dna.php?gene=aaeR&loc=MG1655:3387542..3388471,W3110:3389375..3390304,DH10B:3485287..3486216,REL606:3317417..3318346 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3317417&end=3318346&gene=aaeR&aa=merlkrmsvfakvvefgsftaaarqlqmsvssisqtvskledelqvkllnrstrsiglteagriyyqgcrrmlhevqdvheqlyafnntpigtlrigcsstmaqnvlagltakmlkeypglsvnlvtgipapdliadgldvvirvgalqdsslfsrrlgampmvvcaaksyltqygipekpadlsshswleysvrpdnefeliapegistrlipqgrfvtndpmtlvrwltagagiayvplmwvineinrgeleillpryqsdprpvyalytekdklplkvqvvinsltdyfvevgklfqemhgrgkek Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=aaeR+AND+escherichia+coli Pubmed(aaeR)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=aaeR Textpresso(aaeR)]
</p><input name="field[]" type="hidden" value="&lt;p&gt;&lt;a href=&quot;http://ecoliwiki.net/tools/display_dna.php?gene=aaeR&amp;amp;loc=MG1655:3387542..3388471,W3110:3389375..3390304,DH10B:3485287..3486216,REL606:3317417..3318346&quot; class=&quot;external text&quot; title=&quot;http://ecoliwiki.net/tools/display_dna.php?gene=aaeR&amp;amp;loc=MG1655:3387542..3388471,W3110:3389375..3390304,DH10B:3485287..3486216,REL606:3317417..3318346&quot; rel=&quot;nofollow&quot;&gt;DNA display&lt;/a&gt;&amp;nbsp;&amp;nbsp;&amp;nbsp; &lt;a href=&quot;http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&amp;amp;start=3317417&amp;amp;end=3318346&amp;amp;gene=aaeR&amp;amp;aa=merlkrmsvfakvvefgsftaaarqlqmsvssisqtvskledelqvkllnrstrsiglteagriyyqgcrrmlhevqdvheqlyafnntpigtlrigcsstmaqnvlagltakmlkeypglsvnlvtgipapdliadgldvvirvgalqdsslfsrrlgampmvvcaaksyltqygipekpadlsshswleysvrpdnefeliapegistrlipqgrfvtndpmtlvrwltagagiayvplmwvineinrgeleillpryqsdprpvyalytekdklplkvqvvinsltdyfvevgklfqemhgrgkek&quot; class=&quot;external text&quot; title=&quot;http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&amp;amp;start=3317417&amp;amp;end=3318346&amp;amp;gene=aaeR&amp;amp;aa=merlkrmsvfakvvefgsftaaarqlqmsvssisqtvskledelqvkllnrstrsiglteagriyyqgcrrmlhevqdvheqlyafnntpigtlrigcsstmaqnvlagltakmlkeypglsvnlvtgipapdliadgldvvirvgalqdsslfsrrlgampmvvcaaksyltqygipekpadlsshswleysvrpdnefeliapegistrlipqgrfvtndpmtlvrwltagagiayvplmwvineinrgeleillpryqsdprpvyalytekdklplkvqvvinsltdyfvevgklfqemhgrgkek&quot; rel=&quot;nofollow&quot;&gt;Protein display&lt;/a&gt;&amp;nbsp;&amp;nbsp;&amp;nbsp; &lt;a href=&quot;http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&amp;amp;cmd=Search&amp;amp;Term=aaeR+AND+escherichia+coli&quot; class=&quot;external text&quot; title=&quot;http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&amp;amp;cmd=Search&amp;amp;Term=aaeR+AND+escherichia+coli&quot; rel=&quot;nofollow&quot;&gt;Pubmed(aaeR)&lt;/a&gt;&amp;nbsp;&amp;nbsp;&amp;nbsp; &lt;a href=&quot;http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=aaeR&quot; class=&quot;external text&quot; title=&quot;http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=aaeR&quot; rel=&quot;nofollow&quot;&gt;Textpresso(aaeR)&lt;/a&gt;&#10;&lt;/p&gt;" />


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Revision as of 22:38, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

aaeR

Gene Synonym(s)

ECK3232, b3243, JW3212, yhcS, qseA[1][2]

Product Desc.

quorum sensing transcriptional regulator of LYSR-type[2][3]

Transcriptional regulator for aaeXAB operon; activates ler in O157:H7[4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator, efflux system[1], B3243[2][1], YhcS[2][1], AaeR[2][1], QseA[2][1]

Function from GO

Biological Process

Molecular Function

Knock-Out Phenotype

Biological Process

Molecular Function

Regulation/Expression
Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(aaeR)    Textpresso(aaeR)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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LysR family. Activated by LuxS and AI-2 autoinducer in O157:H7.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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