pcnB:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''pcnB''  
''pcnB''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0142, b0143, JW5808''<ref name='LIB:Riley_2006'/>
''ECK0142, b0143, JW5808''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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poly(A) polymerase I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
poly(A) polymerase I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Poly(A) polymerase; controls plasmid copy number; rare AUU start codon, growth-rate regulated; monomeric<ref name='LIB:EcoGene'/>
Poly(A) polymerase; controls plasmid copy number; rare AUU start codon, growth-rate regulated; monomeric<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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poly(A) polymerase I<ref name='LIB:Riley_2006'/>, B0143<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PcnB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PAP I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
poly(A) polymerase I<ref name='LIB:Riley_2006'/>, B0143<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PcnB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PAP I<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0004652 polynucleotide adenylyltransferase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0003723 RNA binding ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Biological Process'''
* GO:0009451 RNA modification ([http://www.geneontology.org/GO.evidence.shtml IDA,IMP,IGI])
* GO:0006396 RNA processing ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0006397 mRNA processing ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0006276 plasmid maintenance ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0006378 mRNA polyadenylation ([http://www.geneontology.org/GO.evidence.shtml IMP])
'''Cellular Component'''
* GO:0005737 cytoplasm ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:pcnB-folK|pcnB-folK]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:pcnB-folK|pcnB-folK]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=pcnB&loc=MG1655:159126..157729,W3110:159126..157729,DH10B:133230..131833,REL606:161944..160580 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=161944&end=160580&gene=pcnB&aa=mlsreeseaeqavarpqvtvipreqhaisrkdisenalkvmyrlnkagyeawlvgggvrdlllgkkpkdfdvttnatpeqvrklfrncrlvgrrfrlahvmfgpeiievatfrghhegnvsdrttsqrgqngmllrdnifgsieedaqrrdftinslyysvadftvrdyvggmkdlkdgvirlignpetryredpvrmlravrfaaklgmrispetaepiprlatllndipparlfeeslkllqagygyetykllceyhlfqplfptitryftengdspmeriieqvlkntdtrihndmrvnpaflfaamfwyplletaqkiaqesgltyhdafalamndvldeacrslaipkrlttltrdiwqlqlrmsrrqgkrawkllehpkfraaydllalraevernaelqrlvkwwgefqvsappdqkgmlneldeepsprrrtrrprkraprregta Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pcnB+AND+escherichia+coli Pubmed(pcnB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=pcnB Textpresso(pcnB)]


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Revision as of 23:37, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

pcnB

Gene Synonym(s)

ECK0142, b0143, JW5808[1]

Product Desc.

poly(A) polymerase I[2][3]

Poly(A) polymerase; controls plasmid copy number; rare AUU start codon, growth-rate regulated; monomeric[4]

Product Synonyms(s)

poly(A) polymerase I[1], B0143[2][1], PcnB[2][1], PAP I[2][1]

Function from GO

Molecular Function

Biological Process

Cellular Component

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pcnB-folK[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(pcnB)    Textpresso(pcnB)

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


AUU start proven by mutagenesis analysis. PcnB can polyadenylate many mRNAs and it is proposed that Rho-independent transcription terminators serve as polyadenylation signals (Mohanty, 2006).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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