ligB:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ligB''  
''ligB''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3637, b3647, JW3622, yicF''<ref name='LIB:Riley_2006'/>
''ECK3637, b3647, JW3622, yicF''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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DNA ligase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
DNA ligase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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DNA ligase B, NAD(+)-dependent<ref name='LIB:EcoGene'/>
DNA ligase B, NAD(+)-dependent<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DNA ligase, NAD(+)-dependent<ref name='LIB:Riley_2006'/>, B3647<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LigB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YicF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
DNA ligase, NAD(+)-dependent<ref name='LIB:Riley_2006'/>, B3647<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, LigB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YicF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0003911 DNA ligase (NAD+) activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006259 DNA metabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0006266 DNA ligation ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ligB|ligB]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ligB|ligB]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ligB&loc=MG1655:3819193..3817511,W3110:3819245..3820927,DH10B:3916771..3915089,REL606:3757845..3759527 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3757845&end=3759527&gene=ligB&aa=mmmkvwmailigilcwqssvwavcpawsparaqeeisrlqqqikqwdddywkegksevedgvydqlsarltqwqrcfgseprdvmmpplngavmhpvahtgvrkmvdknalslwmrersdlwvqpkvdgvavtlvyrdgklnkaisrgnglkgedwtqkvslisavpqtvsgplanstlqgeiflqreghiqqqmgginarakvaglmmrqddsdtlnslgvfvwawpdgpqlmsdrlkelatagftltqtytravknadevarvrnewwkaelpfvtdgvvvraakepesrhwlpgqaewlvawkyqpvaqvaevkaiqfavgksgkisvvaslapvmlddkkvqrvnigsvrrwqewdiapgdqilvslagqgipriddvvwrgaertkptppenrfnsltcyfasdvcqeqfisrlvwlgakqvlgldgigeagwralhqthrfehifswllltpeqlqntpgiaksksaqlwhqfnlarkqpftrwvmamgipltraalnasderswsqllfsteqfwqqlpgtgsgrarqviewkenaqikklgswlaaqqitgfep Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ligB+AND+escherichia+coli Pubmed(ligB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ligB Textpresso(ligB)]


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Revision as of 23:47, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

ligB

Gene Synonym(s)

ECK3637, b3647, JW3622, yicF[1]

Product Desc.

DNA ligase[2][3]

DNA ligase B, NAD(+)-dependent[4]

Product Synonyms(s)

DNA ligase, NAD(+)-dependent[1], B3647[2][1], LigB[2][1], YicF[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ligB[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(ligB)    Textpresso(ligB)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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