hupB:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''hupB'' | ''hupB'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK0434, b0440, JW0430, dpeA, hopD, dbhB, gsp*''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ECK0434, b0440, JW0430, dpeA, hopD, dbhB, gsp*''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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DNA-binding protein HU-β, NS1 (HU-1)<ref name='LIB:EcoCyc10.6'/>; Transcriptional dual regulator HU-β, NS1 (HU-1)<ref name='LIB:EcoCyc11.1'/>; | DNA-binding protein HU-β, NS1 (HU-1)<ref name='LIB:EcoCyc10.6'/>; Transcriptional dual regulator HU-β, NS1 (HU-1)<ref name='LIB:EcoCyc11.1'/>; | ||
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Histone-like protein HU-beta, HU-1<ref name='LIB:EcoGene'/> | Histone-like protein HU-beta, HU-1<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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HU, DNA-binding transcriptional regulator, beta subunit<ref name='LIB:Riley_2006'/>, B0440<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DpeA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HopD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DbhB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HupB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | HU, DNA-binding transcriptional regulator, beta subunit<ref name='LIB:Riley_2006'/>, B0440<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DpeA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HopD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DbhB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HupB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0016564 transcription repressor activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP]) | |||
* GO:0016563 transcription activator activity ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP]) | |||
* GO:0005515 protein binding ([http://www.geneontology.org/GO.evidence.shtml IPI]) | |||
'''Biological Process''' | |||
* GO:0006350 transcription ([http://www.geneontology.org/GO.evidence.shtml IDA,IEP]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:hupB|hupB]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:hupB|hupB]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=hupB&loc=MG1655:460675..460947,W3110:460675..460947,DH10B:400006..400278,REL606:433506..433778 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=433506&end=433778&gene=hupB&aa=mnksqlidkiaagadiskaaagraldaiiasvteslkegddvalvgfgtfavkeraartgrnpqtgkeitiaaakvpsfragkalkdavn Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hupB+AND+escherichia+coli Pubmed(hupB)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=hupB Textpresso(hupB)] | |||
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Revision as of 23:51, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
hupB |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
DNA-binding protein HU-β, NS1 (HU-1)[2]; Transcriptional dual regulator HU-β, NS1 (HU-1)[3]; Component of HU Transcriptional dual regulator[3] Histone-like protein HU-beta, HU-1[4] |
| Product Synonyms(s) |
HU, DNA-binding transcriptional regulator, beta subunit[1], B0440[2][1], DpeA[2][1], HopD[2][1], DbhB[2][1], HupB[2][1] |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
HU concentration in the cell determines the mechanical effect; flexible bends responsible for compaction occur at concentrations <100nM, while increased concentrations result in the formation of a rigid nucleoprotein filament and no significant concentration. Binds TrxA (Kumar, 2004).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.