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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''gph''  
''gph''  
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3372, b3385, JW3348, yhfE''<ref name='LIB:Riley_2006'/>
''ECK3372, b3385, JW3348, yhfE''<ref name='LIB:Riley_2006'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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GPH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
GPH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Phosphoglycolate phosphatase; in dam operon; involved in degradation of 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends; HAD10<ref name='LIB:EcoGene'/>
Phosphoglycolate phosphatase; in dam operon; involved in degradation of 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends; HAD10<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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phosphoglycolate phosphatase<ref name='LIB:Riley_2006'/>, B3385<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Gph<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
phosphoglycolate phosphatase<ref name='LIB:Riley_2006'/>, B3385<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Gph<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
* GO:0000287 magnesium ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0008967 phosphoglycolate phosphatase activity ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0031404 chloride ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0006281 DNA repair ([http://www.geneontology.org/GO.evidence.shtml IMP])
* GO:0016311 dephosphorylation ([http://www.geneontology.org/GO.evidence.shtml IDA])


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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rpe-gph-trpS|rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:dam-rpe-gph-trpS|dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:damX-dam-rpe-gph-trpS|damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:aroKB-damX-dam-rpe-gph-trpS|aroKB-damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rpe-gph-trpS|rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:dam-rpe-gph-trpS|dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:damX-dam-rpe-gph-trpS|damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:aroKB-damX-dam-rpe-gph-trpS|aroKB-damX-dam-rpe-gph-trpS]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=gph&loc=MG1655:3512411..3511653,W3110:4126027..4126785,REL606:3443071..3442313,DH10B:3610156..3609398 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3610156&end=3609398&gene=gph&aa=mnkfedirgvafdldgtlvdsapglaaavdmalyalelpvageervitwigngadvlmeraltwarqeratqrktmgkppvdddipaeeqvrilrklfdryygevaeegtflfphvadtlgalqakglplglvtnkptpfvapllealdiakyfsvviggddvqnkkphpdplllvaermgiapqqmlfvgdsrndiqaakaagcpsvgltygynygeaidlsqpdviyqsindllpalglphsenqesknd Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gph+AND+escherichia+coli Pubmed(gph)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=gph Textpresso(gph)]


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Revision as of 23:54, 21 January 2010

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions

See Help:Quickview for help with entering information in the Quickview table.

Standard Name

gph

Gene Synonym(s)

ECK3372, b3385, JW3348, yhfE[1]

Product Desc.

GPH[2][3]

Phosphoglycolate phosphatase; in dam operon; involved in degradation of 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends; HAD10[4]

Product Synonyms(s)

phosphoglycolate phosphatase[1], B3385[2][1], YhfE[2][1], Gph[2][1]

Function from GO

Molecular Function

Biological Process

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rpe-gph-trpS[2], dam-rpe-gph-trpS[2], damX-dam-rpe-gph-trpS[2], aroKB-damX-dam-rpe-gph-trpS[2]

Regulation/Activity
Quick Links

DNA display    Protein display    Pubmed(gph)    Textpresso(gph)

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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HAD superfamily. gph is a non-essential gene. Gph has weak phosphoramidase activity in vitro (Kuznetsova, 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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