garR:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''garR'' | ''garR'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3113, b3125, JW5526, yhaE''<ref name='LIB:Riley_2006'/> | ''ECK3113, b3125, JW5526, yhaE''<ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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TSA- | TSA- | ||
Tartronate semialdehyde reductase, glycerate- or galactarate-inducible<ref name='LIB:EcoGene'/> | Tartronate semialdehyde reductase, glycerate- or galactarate-inducible<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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tartronate semialdehyde reductase<ref name='LIB:Riley_2006'/>, B3125<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhaE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GarR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | tartronate semialdehyde reductase<ref name='LIB:Riley_2006'/>, B3125<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhaE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GarR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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'''Molecular Function''' | |||
* GO:0008679 2-hydroxy-3-oxopropionate reductase activity ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
'''Biological Process''' | |||
* GO:0019582 D-galactarate catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
* GO:0042838 D-glucarate catabolic process ([http://www.geneontology.org/GO.evidence.shtml IDA]) | |||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:garPLRK-rnpB|garPLRK-rnpB]]<ref name='LIB:EcoCyc10.6'/>, yhaUFED-rnpB | transcription unit(s): [[:Category:Txn_unit:garPLRK-rnpB|garPLRK-rnpB]]<ref name='LIB:EcoCyc10.6'/>, yhaUFED-rnpB | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=garR&loc=MG1655:3270779..3269889,W3110:3272612..3271722,DH10B:3368524..3367634,REL606:3205686..3204796 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3205686&end=3204796&gene=garR&aa=midmtmkvgfiglgimgkpmsknllkagyslvvadrnpeaiadviaagaetastakaiaeqcdviitmlpnsphvkevalgengiiegakpgtvlidmssiaplasreisealkakgidmldapvsggepkaidgtlsvmvggdkaifdkyydlmkamagsvvhtgeigagnvtklanqvivalniaamsealtlatkagvnpdlvyqairgglagstvldakapmvmdrnfkpgfridlhikdlanaldtshgvgaqlpltaavmemmqalradglgtadhsalacyyeklakvevtr Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=garR+AND+escherichia+coli Pubmed(garR)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=garR Textpresso(garR)] | |||
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Revision as of 23:56, 21 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
garR |
|---|---|
| Gene Synonym(s) |
ECK3113, b3125, JW5526, yhaE[1] |
| Product Desc. |
TSA- Tartronate semialdehyde reductase, glycerate- or galactarate-inducible[2] |
| Product Synonyms(s) |
tartronate semialdehyde reductase[1], B3125[3][1], YhaE[3][1], GarR[3][1] |
| Function from GO |
Molecular Function
Biological Process
|
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): garPLRK-rnpB[3], yhaUFED-rnpB |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
- ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7