csiD:Quickview: Difference between revisions
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!align=left | !align=left {{table_heading_style}} |Standard Name | ||
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''csiD'' | ''csiD'' | ||
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!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ygaT, ECK2653, b2659, JW5427, csi-12''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ygaT, ECK2653, b2659, JW5427, csi-12''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
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Carbon starvation induced gene, function unknown; first gene in csiD-ygaF-gabDTP operon; tetrameric; structural homolog of 2-oxoglutarate Fe(II)-dependent oxygenases<ref name='LIB:EcoGene'/> | Carbon starvation induced gene, function unknown; first gene in csiD-ygaF-gabDTP operon; tetrameric; structural homolog of 2-oxoglutarate Fe(II)-dependent oxygenases<ref name='LIB:EcoGene'/> | ||
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!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted protein<ref name='LIB:Riley_2006'/>, B2659<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgaT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | predicted protein<ref name='LIB:Riley_2006'/>, B2659<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgaT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CsiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ||
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!align=left | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | |||
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transcription unit(s): [[:Category:Txn_unit:csiD-ygaF-gabDTP|csiD-ygaF-gabDTP]]<ref name='LIB:EcoCyc10.6'/>, csiD | transcription unit(s): [[:Category:Txn_unit:csiD-ygaF-gabDTP|csiD-ygaF-gabDTP]]<ref name='LIB:EcoCyc10.6'/>, csiD | ||
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!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[http://ecoliwiki.net/tools/display_dna.php?gene=csiD&loc=MG1655:2787007..2787984,W3110:2787641..2788618,REL606:2683666..2684643 DNA display] [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2683666&end=2684643&gene=csiD&aa=msllcaffrnvdifrlwlrnehrhvtlhlirgsllmnaltavqnnavdsgqdysgftltpsaqsprlleltfteqttkqfleqvaewpvqaleyksflrfrvakilddlcanqlqplllktllnraegallinavgvddvkqademvklatavahligrsnfdamsgqyyarfvvknvdnsdsylrqphrvmelhndgtyveeitdyvlmmkideqnmqggnslllhlddwehldnyfrhplarrpmrfaappsknvskdvfhpvfdvdqqgrpvmryidqfvqpkdfeegvwlselsdaietskgilsvpvpvgkfllinnlfwlhgrdrftphpdlrrelmrqrgyfayasnhyqthq Protein display] [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csiD+AND+escherichia+coli Pubmed(csiD)] [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=csiD Textpresso(csiD)] | |||
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Revision as of 00:06, 22 January 2010
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
See Help:Quickview for help with entering information in the Quickview table.
| Standard Name |
csiD |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
Carbon starvation induced gene, function unknown; first gene in csiD-ygaF-gabDTP operon; tetrameric; structural homolog of 2-oxoglutarate Fe(II)-dependent oxygenases[4] |
| Product Synonyms(s) | |
| Function from GO | |
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): csiD-ygaF-gabDTP[2], csiD |
| Regulation/Activity | |
| Quick Links | |
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
RpoS, cAMP-CRP, HN-S and Lrp regulons.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.