FAMSBASE: Difference between revisions
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*Hideaki Umeyama | |||
**Kitasato University | |||
Mitiko Go | *Mitiko Go | ||
Japan | **Nagahama Institute of Bio-Science and Technology Japan | ||
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<i> Last Updated: May 2005</i> | |||
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Revision as of 22:29, 4 June 2009
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| What: |
Protein structure models by homology modeling |
| Who: |
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| Updates: |
Last Updated: May 2005 |
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About FAMSBASE
Content
FAMSBASE[1] provides automated homology modeling of protein structures.
Using FAMSBASE
FAMSBASE requires a login for full access, but an anonymous public login says that it allows searching for ORFs with 3D models.
Browsing
Following the public login link, many queries take you to a page that asks you to create an account. However, without creating an account, you can view a list of Proteins with FAMSBASE models. This can be restricted to a particular genome by clicking a checkbox for the desired genome. The output gives psiblast scores and links to other FAMSBASE analysis pages (which need a login) and to GTOP. The ones I tested did not link properly to GTOP.
Searching
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
External Links
FAMSBASE URL: http://daisy.nagahama-i-bio.ac.jp/Famsbase/