iscR:Expression: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older editNewer edit →
Edited by wikibot
imported>Wikientrybot
Move help links into the <above> tag inside templates.
Line 33: Line 33:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{expression_transcription_help}}
{|class = 'sortable' {{Prettytable}} id='197563'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" {{Prettytable}}  
|- {{table heading style}}
|- {{table heading style}}
!Transcription unit(s)
!|Transcription unit(s)
|-
|-  
|
|
[[:Category:Txn_unit:iscRSUA|iscRSUA]]  
[[:Category:Txn_unit:iscRSUA|iscRSUA]]  
|-
|-  
|
|
The transcription unit is likely to be longer and include hscBhscAfdx and possibly yfhJpepBsseB
The transcription unit is likely to be longer and include hscBhscAfdx and possibly yfhJpepBsseB[[PMID:16677314]]<ref name=PMID:16677314/>   
[[PMID:16677314]]<ref name=PMID:16677314/>   
 
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39092.M46ab689d47b69&page=39092&pagename={{FULLPAGENAMEE}} edit table]
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39092.M46ab689d47b69&page=39092&pagename={{FULLPAGENAMEE}}&type=&template=Expression_operons_table edit table]
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.M46ab689d47b69-->||{{RegulonDBfig|ECK120003898.jpg|ISCR}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.M46ab689d47b69-->||{{RegulonDBfig|ECK120003898.jpg|ISCR}}
|}
|}
{{expression_transcription_help}}
 
<!--Transcription_notes--></protect>
<!--Transcription_notes--></protect>
===Notes===
===Notes===
Line 77: Line 77:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Expression_allele_table_help}}
{|class = 'sortable' {{Prettytable}} id='197564'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Allele Name!!Mutation!!Phenotype!!Reference
!|Allele Name!!Mutation!!Phenotype!!Reference
 
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39092.S46ab689e11ee6&page=39092&pagename={{FULLPAGENAMEE}} edit table] || || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39092.S46ab689e11ee6&page=39092&pagename={{FULLPAGENAMEE}}&type=&template=Expression_allele_table edit table] || || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.S46ab689e11ee6-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.S46ab689e11ee6-->
{{Expression_allele_table_help}}
 


<big>'''Expression Studies'''</big>
<big>'''Expression Studies'''</big>
Line 97: Line 98:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Expression_studies_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
|- {{table heading style}}
|- {{table heading style}}
Line 103: Line 104:
|-  
|-  
|
|
microarray  
microarray
|
|
[http://genexpdb.ou.edu/index.php?query=b2531 GenExpDB:b2531] ([[EcoliGenExpDB|EcoliWiki Page]])  
[[geoprofiles:b2531|GEO Profiles:b2531]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
|
|
Summary of data for iscR from multiple microarray studies 
NCBI GEO profiles for ''iscR''
|-  
|-  
|
|
microarray
microarray  
|
|
[[geoprofiles:b2531|GEO Profiles:b2531]] ([[Gene_Expression_Omnibus_%28GEO%29|EcoliWiki Page]])
[http://genexpdb.ou.edu/index.php?query=b2531 GenExpDB:b2531] ([[EcoliGenExpDB|EcoliWiki Page]])  
|
|
NCBI GEO profiles for ''iscR''
Summary of data for iscR from multiple microarray studies 


|-class='sortbottom'
|-class='sortbottom'
Line 120: Line 121:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.E46ab689e7d57d-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.E46ab689e7d57d-->
{{Expression_studies_table_help}}
 


<big>'''Expression Resources'''</big>
<big>'''Expression Resources'''</big>
Line 129: Line 130:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Expression_resource_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
|- {{table heading style}}
|- {{table heading style}}
Line 149: Line 150:
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.C46ab689eeda93-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.C46ab689eeda93-->
{{Expression_resource_table_help}}
 
<protect><!--Expression_experimental_notes--></protect>
<protect><!--Expression_experimental_notes--></protect>
===Notes===
===Notes===
Line 159: Line 160:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='197567'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
|
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
[http://ecocyc.org EcoCyc] ([[EcoCyc|EcoliWiki Page]])  
|
|
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7326 EcoCyc:G7326]
[http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7326 EcoCyc:G7326]
|
|
   
   
|-
|-  
|
|
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
[http://www.ecoli-york.org EchoBASE] ([[EchoBASE|EcoliWiki Page]])  
|
|
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3178 EchoBASE:EB3178]
[http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=EB3178 EchoBASE:EB3178]
|
|
   
   
|-
|-  
|
|
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
[http://chase.ou.edu/oubcf/index.php EcoliGenExpDB] ([[EcoliGenExpDB|EcoliWiki Page]])  
|
|
[http://genexpdb.ou.edu/index.php?query=b2531 GenExpDB:b2531]
[http://chase.ou.edu/macro/searchlink.php?bnum=b2531 EcoliGenExpDB:b2531]
|
|
   
   
|-
|-  
|
|
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
[http://ecogene.org EcoGene] ([[EcoGene|EcoliWiki Page]])  
|
|
[http://ecogene.org/geneinfo.php?eg_id=EG13397 EcoGene:EG13397]
[http://ecogene.org/geneinfo.php?eg_id=EG13397 EcoGene:EG13397]
|
|
   
   
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39092.Z46ab689f6a402&page=39092&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39092.Z46ab689f6a402&page=39092&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.Z46ab689f6a402-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.Z46ab689f6a402-->
{{Expression_accessions_table_help}}
 
<protect><!--Accessions_notes--></protect>
<protect><!--Accessions_notes--></protect>
===Notes===
===Notes===
Line 208: Line 210:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='104573'
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
 
|-class='sortbottom'
|-class='sortbottom'
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39092.C46a7c84189b4d&page=39092&pagename={{FULLPAGENAMEE}} edit table] || ||
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.39092.C46a7c84189b4d&page=39092&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.C46a7c84189b4d-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.39092.C46a7c84189b4d-->
{{Links_help}}
 
<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
__NOTOC__
__NOTOC__

Revision as of 07:22, 6 February 2009

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Overview Transcription Translation Turnover Experimental Links References Suggestions

Overview

This is a placeholder for a summary statement on how expression of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Transcription and Transcriptional Regulation

[back to top]


See Help:Expression_transcription for help entering or editing information in this section of EcoliWiki.

Transcription unit(s)

iscRSUA

The transcription unit is likely to be longer and include hscBhscAfdx and possibly yfhJpepBsseBPMID:16677314[1]

edit table
Figure courtesy of RegulonDB


Notes

This is a placeholder for a summary statement about how transcription of this gene is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Translation and Regulation of Translation

[back to top]


gbrowse_img.php?coord=2660133..2660173&genome=ecoli&name=MG1655&trackset=Genes_unlabeled+DNA_unlabeled+flip&width=400&.png
This picture shows the sequence around the N-terminus.

Notes

This is a placeholder for a summary statement about how translation of this gene product is regulated. You can help EcoliWiki by becoming a user and writing/editing this statement.

Turnover and Regulation of Turnover

</protect>

Notes

This is a placeholder for a summary statement about turnover of this gene product. You can help EcoliWiki by becoming a user and writing/editing this statement.

Experimental

[back to top]


Mutations Affecting Expression See Help:Expression_mutations for help entering or editing information in this section of EcoliWiki.

Allele Name Mutation Phenotype Reference
edit table


Expression Studies See Help:Expression_studies for help entering or editing information in this section of EcoliWiki.

Type Reference Notes

microarray

GEO Profiles:b2531 (EcoliWiki Page)

NCBI GEO profiles for iscR

microarray

GenExpDB:b2531 (EcoliWiki Page)

Summary of data for iscR from multiple microarray studies

edit table


Expression Resources See Help:Expression_resources for help entering or editing information in this section of EcoliWiki.

Resource Name Resource Type Description Source Notes

GFP Fusion

Intergenic region (2660080..2660665) fused to gfpmut2.

OpenBioSystems

GFP fusion described in Zaslaver, et al.
Plate:109-AZ10; Well:D9[2]

edit table

<protect>

Notes

Accessions Related to iscR Expression

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

EcoCyc (EcoliWiki Page)

EcoCyc:G7326

EchoBASE (EcoliWiki Page)

EchoBASE:EB3178

EcoliGenExpDB (EcoliWiki Page)

EcoliGenExpDB:b2531

EcoGene (EcoliWiki Page)

EcoGene:EG13397


edit table


Notes

Links

[back to top]


Name URL Comments
edit table


References

[back to top]


  1. ↑ Giel, JL et al. (2006) IscR-dependent gene expression links iron-sulphur cluster assembly to the control of O2-regulated genes in Escherichia coli. Mol. Microbiol. 60 1058-75 PubMed
  2. ↑ Zaslaver, A et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat. Methods 3 623-8 PubMed


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=iscR:Expression&oldid=694543"